Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2886 ATGGAGAATCAGAATCAGCTTCCAAATGGCAAAAATGCAATGGAAGAAGAACTAATTAGAGGGCGTGACATGGCAAATCAGATTCTTGAAGTACTTGCTCATGATAAGGATGAAGGGTCAACAAACTCAAAGTCAGTGTTACCATTTGTTGAAGATCTTGTGCGCAAGGTCTTGTGTTCATTCACAAATACCCTTTTGCTTTTGAACTCCAATAACGATGTCTCCTATGAGGTGGTGGCATCTATTGCTCCCAAACATGTCTCTTCGTCCACGAGTTCCCCAAAGCTGGAGTCTTCGGATGAAACCTGCAAGAGTCTCATGAACACTAAAACTAGAAGAAGAGGCTACAAGCGAAAATCAATTGCGCCAGCTTGGGAGAAGGACAGCTCAATACTGATTGAAGATGGTTATGTATGGAGAAAGTATGGACAAAAAATGACATTGAACGCCAAATACCTTAGGAGCTACTACAGGTGCTCTCACAAGAATGATCAGGGATGCCAAGCAATGAAACAGGTGCAAAGAATTCAAGATAACCCTCCATTGTACCGAACAACCTATTATGGCCATCATACTTGTAGAAGCCCTTTGAATCCCGAGATTATTTTGGAACCTATTTCTCCCTCTGCTTCTTCCACCTTACTTAGCTTTAATAATAGTTTTCAAAGACAACAAGAAAGCCCGTTTCCCTCATCACTACTTGCATCAACCAAACAAGAGCCCGTGGAAGTGATTCAAGATTATCATAGTGCTCAAAATCAGTTGTCCTCACCTGAAGATCTCCTATTATACGATTATGATTTTTTTTTTGACTATTCGAAGCGTGTGGCCTCGCTATCATCCACTGAAACCGTTGAATTTGAGAATGTTTATGAGCAGTTTGGATTTTGA 891 0.4085 MENQNQLPNGKNAMEEELIRGRDMANQILEVLAHDKDEGSTNSKSVLPFVEDLVRKVLCSFTNTLLLLNSNNDVSYEVVASIAPKHVSSSTSSPKLESSDETCKSLMNTKTRRRGYKRKSIAPAWEKDSSILIEDGYVWRKYGQKMTLNAKYLRSYYRCSHKNDQGCQAMKQVQRIQDNPPLYRTTYYGHHTCRSPLNPEIILEPISPSASSTLLSFNNSFQRQQESPFPSSLLASTKQEPVEVIQDYHSAQNQLSSPEDLLLYDYDFFFDYSKRVASLSSTETVEFENVYEQFGF* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2886 296 Gene3D WRKY domain 119 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso11g2886 296 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 289 - -
Gso11g2886 296 ProSiteProfiles WRKY domain profile. 128 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g2886 296 SUPERFAMILY WRKY DNA-binding domain 130 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso11g2886 296 Pfam WRKY DNA -binding domain 134 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g2886 296 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 289 IPR044810 GO:0003700
Gso11g2886 296 SMART WRKY_cls 133 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2886 Gso-Chr11 44626342 44629723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2886 17 195 WRKY Transcription Factor Family AT3G56400 38.333 3.15e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso11g2886 WRKY 4.4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2886 - - gmx:102663281 580.096