Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2879 ATGATGCGGTTTGTGATGTCTTCAAGCAGCATACGTGTGTCGACTATGTTCTTCATTTTTATGTTCCTGGCTTCCCTACACTTTGGATCCAACGCTCAACTCATACCACAAGATGAAGTGAAATTGCTACAAGCAATATCAGACAAGGTAGAGAACTTGAATTGGAAAGTTACACAACGTTCCTGCAACGTAAAAGGGGATAGAGGATTTGATAACAGGAAAATTTCAAGGGATCAGGCTCAAATCATAAGGAATGTCACGTGTGATTGCACTTCTAACAATTTCACTACTTGCCATGTGACATCAATCTCTCTCAAGGGTCTCAATATATCTGGACCTATACCCGATGAATTGGGAAATCTAAATCGACTTGAAATACTTGATCTCACTCGGAATAATTTCAATGGCTCAATTCCAAAAAGCCTTGGACGCCTCTCATCAGTTGTCACTCTGTCACTTTTGGGAAATCGACTTACTGGTTCAATTCCCTCAGAAATTGGTGACATGGCTAGTCTGCAAGAACTGAACTTGGAAGATAATCAACTTGAGGGACCTCTTCCTCCGAGCCTTGGAAAAATGAGCAGCTTGCTGAGATTACTTCTTTCTACAAATAATTTCACAGGGACAATACCAGAAACATATGGAAATCTAAAGAATCTCACCATGTTTAGGATAGATGGGAGCAGTTTATCTGGGAAGATACCCACTTTTATTGGGAACTGGACCAAACTTGATAGATTGGATTTGCAGGGCACATCCATGGAAGGCCCGATTCCTTCTGTCATATCTGACTTGACAAATTTGACAGAATTGAGGATATCTGATTTGAAGGGACCAGCTATGACATTTCCTAATCTGAAGAATTTGAAACTCTTGCAAAGACTGGAATTGAGGAATTGCTTAATAACTGGTCCCATTCCAAGATACATTGGAGAAATAGAAAGTTTAAAAACTATAGATCTGAGCTCCAACATGCTGACTGGTACAATCCCAGATACATTTCAAGACTTGGGAAAACTAAATTACTTGTTTCTGACTAACAATTCTCTAAGTGGACGAATTCCTGATTGGATACTGAGCATAAAACAAAATATTGATTTATCTTTGAACAATTTCACAGAGACTTCTGCAAGTAATTGCCAAATGTTGGATGTGAACTTAGCTTCCAGCCTCTCTCGCTCAGCAAACACTCCAATATCTTGTTTGAAGATGGGCCAACCTTGTTCAGGAAAACCCCAATTTCATTCACTGTTCATAAACTGTGGAGGACCTGAAACAAAGATTGAGGGCAATGAATATGAGGCTGACCTCAATCTACGTGGCATTTCAAACTATTTTTCTAGTAATGGTGGCAAATGGGCTTATAGCAGCACTGGAGTATTTCTAGGAAATGATAAAGCTGATTATGTAGCAACAAATCAGTTTTACTTGAATATTAGTGGTCCTGATTACTTCAAAACAGCCCGCATGGCCCCTCTGTATCTTAATTACTATGGCCTTTGTATGCTGAACGGCAATTATAAAGTGAAACTTCATTTTGCTGAGATAGCATTCTCTGATGACCAATCATATAGCAGCCTTGGAAAGCGTGTATTCGATGTTTCAATTCAAGGTTTTAAATATTTGAAAGATTTTAACATTGCGAAAGAAGCTGGTGGAGTTGGTAAGGGAATCACTAGGGAGTTTAATGTGAATGTTACAGACAACACCTTGGAAATCCACTTATCCTGGGCAGGAAAAGGAACTAATGCCATTCCTATAAGAGGTGTATATGGACCTCTCATATCTGCTATCACTGTGACCTCAAACTTTAAAGTTTATGGACATGGGTTCTCCACTGGAACAATTGTTGGAATTGTGGTTGGGGCATGTGTGATTGTCATATTGATACTCTTTGCTCTTTGGAAGATGGGTTTCCTTTGTCGGAAAGATCAAACAGACCAAGAACTTCTAGGTCTGAAAACAGGTTATTTCAGTTTAAGACAAATTAAAGCTGCTACTAATAACTTTGACCCAGCAAATAAGATAGGTGAAGGGGGCTTTGGACCAGTATACAAGGGTGTACTATCAGATGGTGCTGTGATTGCTGTTAAGCAGCTCTCCTCCAAATCAAAGCAAGGGAATCGCGAATTCATCAATGAAATAGGCATGATATCTGCTTTGCAGCATCCAAATCTTGTGAAACTTTATGGCTGTTGCATTGAAGGAAACCAGTTGCTGCTAGTATATGAGTACATGGAGAACAATAGTCTTGCTCGTGCACTTTTTGGTAAAGAAAATGAGAGGATGCAATTGGACTGGCCCAGAAGAATGAAAATTTGTGTGGGGATTGCAAAGGGATTAGCTTATCTTCATGAGGAGTCAAGGTTGAAAATTGTGCACAGGGATATTAAGGCAACCAATGTCTTACTTGATAAACATCTGCATGCCAAGATCTCTGACTTTGGTTTAGCCAAACTTGATGAAGAAGAGAACACTCATATCAGCACAAGGATAGCCGGGACAATTGGTTACATGGCTCCTGAGTATGCTATGAGGGGTTACTTGACTGACAAAGCAGATGTCTATAGCTTTGGAGTTGTAGCTTTAGAGATTGTTAGTGGAAAGAGCAACACAAATTACAGGCCAAAGGAGGAGTTTGTATATCTTTTAGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTTCTAGAGCTGGTGGATCCAAGTCTTGGTTCAAAGTACTCCTCGGAAGAGGCCATGAGAATGCTGCAGTTAGCACTCTTGTGCACCAATCCTTCTCCCACTCTTAGACCATCTATGTCATCAGTGGTGAGCATGCTTGAGGGAAAAACTCCAATTCAAGCACCAATAATTAAACGCAGTGACAGTGTAGAAGATGTAAGATTTAAAGCCTTTGAGATGTTATCACAAGACAGTCAAACTCATGTCTCTTCTGCATTCTCACAAGATAGTATAGAGCAAGGAAGCAAATCAATGGGGGGACCATGGCTTGACTCCTCCATATCTCTTCCAAGTAGAATTGATTATGCTTCAAACGATCAACTTATTAGAAATTCGAATAATGTGTGA 3072 0.3994 MMRFVMSSSSIRVSTMFFIFMFLASLHFGSNAQLIPQDEVKLLQAISDKVENLNWKVTQRSCNVKGDRGFDNRKISRDQAQIIRNVTCDCTSNNFTTCHVTSISLKGLNISGPIPDELGNLNRLEILDLTRNNFNGSIPKSLGRLSSVVTLSLLGNRLTGSIPSEIGDMASLQELNLEDNQLEGPLPPSLGKMSSLLRLLLSTNNFTGTIPETYGNLKNLTMFRIDGSSLSGKIPTFIGNWTKLDRLDLQGTSMEGPIPSVISDLTNLTELRISDLKGPAMTFPNLKNLKLLQRLELRNCLITGPIPRYIGEIESLKTIDLSSNMLTGTIPDTFQDLGKLNYLFLTNNSLSGRIPDWILSIKQNIDLSLNNFTETSASNCQMLDVNLASSLSRSANTPISCLKMGQPCSGKPQFHSLFINCGGPETKIEGNEYEADLNLRGISNYFSSNGGKWAYSSTGVFLGNDKADYVATNQFYLNISGPDYFKTARMAPLYLNYYGLCMLNGNYKVKLHFAEIAFSDDQSYSSLGKRVFDVSIQGFKYLKDFNIAKEAGGVGKGITREFNVNVTDNTLEIHLSWAGKGTNAIPIRGVYGPLISAITVTSNFKVYGHGFSTGTIVGIVVGACVIVILILFALWKMGFLCRKDQTDQELLGLKTGYFSLRQIKAATNNFDPANKIGEGGFGPVYKGVLSDGAVIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYMENNSLARALFGKENERMQLDWPRRMKICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKHLHAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSKYSSEEAMRMLQLALLCTNPSPTLRPSMSSVVSMLEGKTPIQAPIIKRSDSVEDVRFKAFEMLSQDSQTHVSSAFSQDSIEQGSKSMGGPWLDSSISLPSRIDYASNDQLIRNSNNV* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2879 1023 PANTHER - 78 303 - -
Gso11g2879 1023 PANTHER - 302 358 - -
Gso11g2879 1023 PANTHER - 388 1002 - -
Gso11g2879 1023 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 78 303 - -
Gso11g2879 1023 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 302 358 - -
Gso11g2879 1023 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 388 1002 - -
Gso11g2879 1023 ProSiteProfiles Protein kinase domain profile. 670 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2879 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Gso11g2879 1023 Gene3D Ribonuclease Inhibitor 37 277 IPR032675 -
Gso11g2879 1023 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 191 221 IPR000225 GO:0005515
Gso11g2879 1023 Pfam Leucine rich repeat 292 350 IPR001611 GO:0005515
Gso11g2879 1023 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Gso11g2879 1023 CDD STKc_IRAK 676 943 - -
Gso11g2879 1023 Gene3D Transferase(Phosphotransferase) domain 1 746 958 - -
Gso11g2879 1023 SMART serkin_6 670 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2879 1023 Pfam Protein tyrosine and serine/threonine kinase 674 941 IPR001245 GO:0004672|GO:0006468
Gso11g2879 1023 SUPERFAMILY Protein kinase-like (PK-like) 654 942 IPR011009 -
Gso11g2879 1023 Pfam Malectin domain 417 598 IPR021720 -
Gso11g2879 1023 Gene3D Phosphorylase Kinase; domain 1 638 745 - -
Gso11g2879 1023 SUPERFAMILY L domain-like 88 397 - -
Gso11g2879 1023 Gene3D Ribonuclease Inhibitor 278 391 IPR032675 -
Gso11g2879 1023 Gene3D - 415 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2879 Gso-Chr11 44538475 44550077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2879 10 1007 Receptor kinase-like Gene Family AT1G53440 61.980 0.0 1218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g2879 PK_Tyr_Ser-Thr 6.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2879 - - gmx:121173337 1974.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1962 12 43630362 43643051 Gso11g2879 11 44538475 44550077 GST