Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2868 ATGAAGATTCAGTGTAACGTGTGTGAGGCTGCGGAGGCCAAGGTTCTGTGTTGTGCTGACGAGGCTGCGCTGTGTTGGGAGTGTGATGAGAAGGTTCATGCGGCTAACAAGCTTGCCAGCAAGCACCAGAGAGTGCCTCTTTCTACCTCTTCCTCTCATATGCCCAAATGTGACATTTGTCAGGAAGCATTAGGCTATTTTTTCTGTCTAGAAGATCGGGCTCTGCTCTGCAGAAAATGTGATGTGGCAATACACACTGCAAATGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTCACTGGTGTAAGAGTAGGCCTTGAAGCTATAGACCCTGGTGCTTCCTTAACTTCTTTGAAGTCAGATTCTGGGGAGAAAGTTTCAGATACAAAGTCTTCTTCTGTCTCTAGAAAGGTTTCCACAGTGCCCCAGCCATCAAATTACAATGAAGTGCTACCCATTGAAGTTGGAGGAGTAGGGGAGTTTCCACCAGCCAAGGTGTCTTTTGGTGGTGGTTCTACAGATGGAAATATCTCACAGTGGACTATTGATGAATTTATTGGCTTAAACGAGTTCAGTCAGCATTATGATTACATGGAAGGATCATCAAGGGCCGATGGTGGTAAGCTTGGGGATTCTGATTCTCCTGTTTTAAAGTCTGGTGAAGAGGATATGGAGGAGGAGGATGACTATTTGGAACGTGTTCCAGATTCGTCGTGGACAGTTCCTCAGATCCCTTCCCCACCTACTGCTTCTGGGTTATGCTGGCCAAAAGACCCTCAATATTCATCTGATAGTGTTCTGTTTGTTCCTGACATAAGCTTCTCTCTCATTCAACAATCTCAGATTAGTAGTATTTGTTTGAGACGCTGGAGGCAGCTTTAA 882 0.4535 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDICQEALGYFFCLEDRALLCRKCDVAIHTANAYVSGHQRFLLTGVRVGLEAIDPGASLTSLKSDSGEKVSDTKSSSVSRKVSTVPQPSNYNEVLPIEVGGVGEFPPAKVSFGGGSTDGNISQWTIDEFIGLNEFSQHYDYMEGSSRADGGKLGDSDSPVLKSGEEDMEEEDDYLERVPDSSWTVPQIPSPPTASGLCWPKDPQYSSDSVLFVPDISFSLIQQSQISSICLRRWRQL* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2868 293 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gso11g2868 293 MobiDBLite consensus disorder prediction 117 141 - -
Gso11g2868 293 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 291 - -
Gso11g2868 293 MobiDBLite consensus disorder prediction 199 255 - -
Gso11g2868 293 CDD Bbox1_BBX-like 5 47 - -
Gso11g2868 293 Gene3D Classic Zinc Finger 1 92 - -
Gso11g2868 293 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 291 - -
Gso11g2868 293 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gso11g2868 293 SMART bboxneu5 52 99 IPR000315 GO:0008270
Gso11g2868 293 CDD Bbox1_BBX-like 56 99 - -
Gso11g2868 293 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Gso11g2868 293 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2868 Gso-Chr11 44412861 44417140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2868 1 275 C2C2-CO-like Transcription Factor Family AT1G78600 51.125 1.93e-93 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gso11g2868 zf-B_box 5.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2868 - - gmx:100790959 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1970 12 43780560 43784310 Gso11g2868 11 44412861 44417140 GST