Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2811 ATGGCGAGAAAGAAGATACCGATCAAGAAGATCGATAACATAAACGCGAGGCAGGTAACATTCTCAAAGAGGAGAAAAGGTCTTTTCAAGAAGGCTCAGGAACTGTCAACTCTTTGCGATGCTGAGATTGCTCTCATAGTCTTTTCCACCACTAGCAAACTCTTTGAGTACGCTAGTTCAAGCATGCAACAAATACTTGAAAGGCGTGATCGGCATTCAGGGATTCAAGGATTAGTTAATCCATCTATTGGTCAACAGCTTGGAAGTGACTCCCTTGGCATCCTGCGAAAGGAAATAGAACATAAGACTAATGAAATGAGTCAGTTGAATGGGGAAGAGATCCAAGGATTGACAATAAAAGAATTGCAGAAAGTGGAGGAACTTCTTCAAAGACGTTGGACCACTATTTCAAAAATTAAGGAAGCCAAACTTATGGAAGAGAACCAGAAATTGAAGCAGAGCTTCGTACGAGAACAAAGGCAACCATACGAGTCATTTACCTGCAGTTCATCTGAATTTCCTCCAGACTGTGGTTGTCTTTATTTGAATGAAACAAAAATGTTGGTTCAGAAGACTATAGTGAGAAGTTAA 591 0.4027 MARKKIPIKKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSTTSKLFEYASSSMQQILERRDRHSGIQGLVNPSIGQQLGSDSLGILRKEIEHKTNEMSQLNGEEIQGLTIKELQKVEELLQRRWTTISKIKEAKLMEENQKLKQSFVREQRQPYESFTCSSSEFPPDCGCLYLNETKMLVQKTIVRS* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2811 196 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso11g2811 196 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso11g2811 196 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso11g2811 196 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso11g2811 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso11g2811 196 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 158 - -
Gso11g2811 196 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Gso11g2811 196 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso11g2811 196 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Gso11g2811 196 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso11g2811 196 Coils Coil 92 112 - -
Gso11g2811 196 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Gso11g2811 196 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 158 - -
Gso11g2811 196 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2811 Gso-Chr11 43832954 43840243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2811 1 153 MADS-box Gene Family AT2G22540 51.613 8.68e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso11g2811 SRF-TF 2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2811 - - gmx:100810422 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0496 15 4467796 4474805 Gso11g2811 11 43832954 43840243 GST
Gso8g0570 8 5251260 5261703 Gso11g2811 11 43832954 43840243 PCT
Gso11g2811 11 43832954 43840243 Gso8g0570 8 5251260 5261703 PCT