Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2810 ATGTGGCATATTCATGTCTTCCCCCACACCGTTTTTTCTTTGGAATCAAAGGACTGGGCTAGGGTTGCTTTCGCTTCTGCATTCTCGATCGCCAAGGAATCTTCTGCCTTCCATCGTAACAAGAAAATGGTGAGAAGGAAGATACCGATCAAGAAGATCGACGACGTAACTGCGAGGCAGGTGACATTCTCAAAGAGGAAGAGTGGTCTTTTCAAGAAGGCACGTGAGCTCTCTCTTCTCTGTGATGCTGAGATAGCACTCATAGTCTTTTCACCTGGTGGCAAGCTCTTCGACTATGGTAGTTCAAGTATGCAGAAGGTAATTGAAAGGCATATTTTACGGTCAGAGCTTAACCTTGAAAAATTAGACCAGTCGTGTCCTACGGAGCAGGTGAGATGTAATTATGCTGATTTGAACAAGGAATTTGCAGACAGGACTCGTGAAATGAGACAACTGAATGGAGAAGAACTGCAAGGATTGACCCTAAGGGAACTTCAGAAATTAGAAGAACGACTTGACTCATCCTTGAACCGTGTTTATAAAGCGAAGGTTGAAAATTTTATAAAAGAGATCGGTATTCTTAAGGAAAAGGGAAAAAAACTCATGGAAGATAACATGCTGATAAAACAGATGATAAAATTACCGAGGAATGAAATATGTTCGGTCCAGAGACATGAGCATGAACAAGGCCAGCTCTTTGACACCTCCCTCACGTTGGGGCTACCTTTTCCTGCTGGCTCAAAGTAG 747 0.4297 MWHIHVFPHTVFSLESKDWARVAFASAFSIAKESSAFHRNKKMVRRKIPIKKIDDVTARQVTFSKRKSGLFKKARELSLLCDAEIALIVFSPGGKLFDYGSSSMQKVIERHILRSELNLEKLDQSCPTEQVRCNYADLNKEFADRTREMRQLNGEELQGLTLRELQKLEERLDSSLNRVYKAKVENFIKEIGILKEKGKKLMEDNMLIKQMIKLPRNEICSVQRHEHEQGQLFDTSLTLGLPFPAGSK* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2810 248 ProSitePatterns MADS-box domain signature. 45 99 IPR002100 GO:0003677|GO:0046983
Gso11g2810 248 PRINTS MADS domain signature 45 65 IPR002100 GO:0003677|GO:0046983
Gso11g2810 248 PRINTS MADS domain signature 65 80 IPR002100 GO:0003677|GO:0046983
Gso11g2810 248 PRINTS MADS domain signature 80 101 IPR002100 GO:0003677|GO:0046983
Gso11g2810 248 ProSiteProfiles K-box domain profile. 128 218 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso11g2810 248 Gene3D - 56 124 IPR036879 GO:0003677|GO:0046983
Gso11g2810 248 Pfam K-box region 128 212 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso11g2810 248 CDD MADS_MEF2_like 45 111 IPR033896 GO:0000977|GO:0045944
Gso11g2810 248 Coils Coil 135 155 - -
Gso11g2810 248 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 43 216 - -
Gso11g2810 248 SUPERFAMILY SRF-like 45 121 IPR036879 GO:0003677|GO:0046983
Gso11g2810 248 ProSiteProfiles MADS-box domain profile. 43 103 IPR002100 GO:0003677|GO:0046983
Gso11g2810 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 43 216 - -
Gso11g2810 248 SMART madsneu2 43 102 IPR002100 GO:0003677|GO:0046983
Gso11g2810 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 52 99 IPR002100 GO:0003677|GO:0046983
Gso11g2810 248 Coils Coil 165 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2810 Gso-Chr11 43819800 43831059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2810 43 210 MADS-box Gene Family AT2G22540 53.529 1.02e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso11g2810 K-box 4.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2810 - - gsj:114374895 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0497 15 4478370 4488726 Gso11g2810 11 43819800 43831059 GST