Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2794 ATGGGGAGAGGTAAGATTGCGATTCGAAGGATCGACAACTCCACTAGCCGGCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTAGAGAATTATCAATTCTTTGTGATGCTGAAGTTGGATTGATGGTGTTCTCCAGCACTGGGAAGCTTTATGACTATGCAAGCACAAGCATGAAAGCGGTTATTGAACGCTACAACAAGCTAAAAGAGGAAACCCATCACCTCATGAATCCGGCTTCAGAAGAGAAGTTTTGGCAGACAGAAGCAGCAAGCTTGAGGCAGCAGCTTCAGTACTTGCAAGAATGCCACAGGCAATTAATGGGGGAAGAACTTACGGGTTTGGGTATTAAAGAACTACAAAATCTGGAAAACCAACTGGAGATGAGTTTAAAGGGTGTCCGCATGAAAAAGGATCAAATTTTAACTAATGAGATTAAAGAACTACGCCAAAAGGGAAATATCATTCATCAAGAAAATGTTGAACTCTATCAAAAGATGGAGCAGATCCAAAAAGAAAATGCAGAGCTACAAAAGAAGGTTTATGAAGCAAGGAGTACAAATGAAGAAAATGTGGCATCCAATCCTTCTTACAACGTCAGAAATGGATATGATTCACTTGCATCTATCAGTCTCCAGCTAAGTCAGCCACAGTCTCAATACAAATACAGTGAACCATCAACCAAAGCAATGAAACTCGGATTGCAGCTGCATTAG 726 0.4077 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTSMKAVIERYNKLKEETHHLMNPASEEKFWQTEAASLRQQLQYLQECHRQLMGEELTGLGIKELQNLENQLEMSLKGVRMKKDQILTNEIKELRQKGNIIHQENVELYQKMEQIQKENAELQKKVYEARSTNEENVASNPSYNVRNGYDSLASISLQLSQPQSQYKYSEPSTKAMKLGLQLH* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2794 241 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso11g2794 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 240 - -
Gso11g2794 241 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Gso11g2794 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso11g2794 241 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Gso11g2794 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso11g2794 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso11g2794 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso11g2794 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso11g2794 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso11g2794 241 Coils Coil 163 190 - -
Gso11g2794 241 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 240 - -
Gso11g2794 241 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso11g2794 241 Coils Coil 120 140 - -
Gso11g2794 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso11g2794 241 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2794 Gso-Chr11 43696183 43711819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2794 1 230 MADS-box Gene Family AT2G22630 61.039 1.91e-93 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso11g2794 K-box 1.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2794 K09264 - gmx:100805092 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g0548 8 5069303 5075161 Gso11g2794 11 43696183 43711819 PCT
Gso11g2794 11 43696183 43711819 Gso8g0548 8 5069303 5075161 PCT