Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2788 ATGCAGGAGAACTACTCATACCAATCGTATCCAGATTCCGGCGAGTCCTCACCACGATCCAGAGAGATAGACTTCGACAACCCTCCTCCATGGGACGACCAAAACTACAAAGCCAAGTTCATGTGCAGCTACGGCGGCAAGATCCTCCCTCGCTCCCACGACAACCAGCTCTCCTACGTCGCCGGCGAGACCAAAATTCTCGCCGTCGACCGCTCCATCAAGTTCTCCGCCATGCTCGCCAAACTCTCCGCCCTCTGCGACGCCCCAGACAACAACAACCTCACCTTCAAGTACCAGCTTCCCGGCGAAGACCTCGACGCCCTCATCTCCGTCACCAACGACGACGACCTCGATCACATGATGCACGAATACGATCGCCTCTATCGCGCTTCCGCTAGACCCTCCCGCATGCGACTATTCCTCTTTCCCTCCGATACTCTTCCTTCCCCTCCACCTGCTGCTTCTGCTCCACACGATTCGGTTATCAAACCTAATAACGTCGATTTTCTCTTCGGTCTCCAGCCTCAGCCACCACCTATTGATGTCAAATTCAATGATCCGCTGCCGGAGCCCGTGGCGCCGCCGCCGGAGCATCCGTTGCGATTCAATTTTAACCCTGCGGTCTCGGATCCGAGCGCGATTCAGCGCCAGTTGCAGCAACTGCAAATTGCGGAGAACGAGCAAGCTGCGCATCGGAGGAAGGGTGAGGATAATTACCCCGCCGGTGATTACTACGTTCAAAAAGTGCCTGAGAAGTTCCCCCCACCGAATTTTCTGGCAAGCTCGCCGGGTTATTGGCCTGAAAAACATGTTTCCGGCGACGTTTATCCTCCGGCTGTGACGGCTACGTCCGGCGGAGGGGAACCGTCGGTTTATATGGTTCCGGCGCCGGGGACGTTCTATCATGCACCGGTTATGCGGCCTCCACCTCCAGCAACTCAGGGATACTACACCGTGCAACGAATGGGTTCCGATAATTACCGTGAAGCGCCGGTGTACGGCGGTGTTCCGCCGCCAAAAGCGGCGGTTCCGGCGAGTATGGCGCCAGCCCAGCAGCCGATTAAGGCTCCCGCGTATACGGAAGGATTCGGAATGGTTCGGCCAGGTGGGATAGTGGATAATACTGGTGTTCCGTACGCGCAGGTGGCGTACGATAGTGGAAGTGGGAGACAGGTTTATTATACTGCGCCCGGTGGTGGTGTAACGCACGCTCCTCCGTACCATGGGGTTTTTCCGCCCGTAACCGCTGATATGAGACTGGGAGGGGTTTCGTTTGGTCAGGATGTTAAAGTCATAAGCAAGCTTACCCAAGGTTCAGTCTGA 1323 0.5639 MQENYSYQSYPDSGESSPRSREIDFDNPPPWDDQNYKAKFMCSYGGKILPRSHDNQLSYVAGETKILAVDRSIKFSAMLAKLSALCDAPDNNNLTFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPSRMRLFLFPSDTLPSPPPAASAPHDSVIKPNNVDFLFGLQPQPPPIDVKFNDPLPEPVAPPPEHPLRFNFNPAVSDPSAIQRQLQQLQIAENEQAAHRRKGEDNYPAGDYYVQKVPEKFPPPNFLASSPGYWPEKHVSGDVYPPAVTATSGGGEPSVYMVPAPGTFYHAPVMRPPPPATQGYYTVQRMGSDNYREAPVYGGVPPPKAAVPASMAPAQQPIKAPAYTEGFGMVRPGGIVDNTGVPYAQVAYDSGSGRQVYYTAPGGGVTHAPPYHGVFPPVTADMRLGGVSFGQDVKVISKLTQGSV* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2788 440 Gene3D - 58 144 - -
Gso11g2788 440 MobiDBLite consensus disorder prediction 1 30 - -
Gso11g2788 440 PANTHER OS05G0427100 PROTEIN-RELATED 1 434 - -
Gso11g2788 440 Coils Coil 214 234 - -
Gso11g2788 440 CDD PB1_UP2 41 142 - -
Gso11g2788 440 SMART PB1_new 52 144 IPR000270 GO:0005515
Gso11g2788 440 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 1 434 - -
Gso11g2788 440 MobiDBLite consensus disorder prediction 1 16 - -
Gso11g2788 440 SUPERFAMILY CAD & PB1 domains 53 146 - -
Gso11g2788 440 Pfam PB1 domain 53 143 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2788 Gso-Chr11 43629298 43631039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2788 32 144 MAP Kinase Kinase Kinase AT5G57610 45.133 1.85e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2788 - - gmx:100801566 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0520 15 4681366 4683063 Gso11g2788 11 43629298 43631039 GST
Gso7g1564 7 37417530 37419321 Gso11g2788 11 43629298 43631039 PCT
Gso8g0544 8 5013156 5014802 Gso11g2788 11 43629298 43631039 PCT
Gso11g2788 11 43629298 43631039 Gso7g1564 7 37417530 37419321 PCT
Gso11g2788 11 43629298 43631039 Gso8g0544 8 5013156 5014802 PCT