Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2780 ATGATTGATTTTAATGCATGTACATGGGATGTTGTACTTTTTGATATATTAATTAGGTTGATAGCTTCAGCTGTTTTTCATTTCATGAGGACTTCTCATATGGAGATTTCATCAATCAGAGGGTTGCCTGAAATGGGGATAATAGAGGATCCTAACTTCCTCCATCACTGGCAGTTAAACTCTATTGATACAACTAGCCTAACAGGTGCTCCTTTTGGAGAGATTTTACAAAAGCACTCATTCTCTGATAACTCAAATTTCAACCCCAAAACATCCATGGAAACATCACCAACTGGAATTGAAAGACCTGCAAAACAGCTCAGAAATAACAGCTGGAATCACAACAAAAGTCAACAACAGACACCAGAAACACAATTTGCTTCATGCTCAAATCTTCTTTCATTTGTTAATTCGAATTACACGAGCGAATTGGGACTAGTGAAACCTAAGGTGGAGATGGTGTGTCCTAAAATCAACAACAACACTCTCGCAGACATGTTGATCTCTCAAGGAAACTTAGGAAATCAAAACTATCTTTTCAAGGCTAGCCAGGAGGCCAAAAAGATTGAAACACGTCCTAAACTTTCTCAACCTCAAGACCACATAATAGCTGAAAGGAAGCGAAGAGAGAAGCTCAGCCAACGGTTCATTGCTCTATCTGCTCTTGTTCCGGGCCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATAAAGTACTTGAAGCAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAACAGGAAGAGAACTGTGGAATCTGTGGTAATTGTGAAGAAATCCCGGCTATCTAGTGATGCTGAAGACTCTTCTTCTTCAGAAACCGGTGATACATTTGATGAGGCACTACCTGAAATTGAAGCAAGATTTTATGAAAGAAATGTCCTCATAAGAATACATTGTGAGAAGAATAAAGGAGTCATAGAGAAAACAATCAGCGAAATTGAGAAACTCCATCTAAAAGTCATCAATAGCAGTGCCTTGACATTTGGGAGTTTCATCCTGGATATAACAATTATTGCTCAGATGGATATGGAATTCTGCATGACAGTGAAGGATCTTGTGAGAAGTTTACGCTCAGCCTTTTCATATTTCGTGTGA 1131 0.3908 MIDFNACTWDVVLFDILIRLIASAVFHFMRTSHMEISSIRGLPEMGIIEDPNFLHHWQLNSIDTTSLTGAPFGEILQKHSFSDNSNFNPKTSMETSPTGIERPAKQLRNNSWNHNKSQQQTPETQFASCSNLLSFVNSNYTSELGLVKPKVEMVCPKINNNTLADMLISQGNLGNQNYLFKASQEAKKIETRPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAIKYLKQMQEKVSALEEEQNRKRTVESVVIVKKSRLSSDAEDSSSSETGDTFDEALPEIEARFYERNVLIRIHCEKNKGVIEKTISEIEKLHLKVINSSALTFGSFILDITIIAQMDMEFCMTVKDLVRSLRSAFSYFV* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2780 376 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 35 375 - -
Gso11g2780 376 Coils Coil 235 262 - -
Gso11g2780 376 Pfam Helix-loop-helix DNA-binding domain 199 246 IPR011598 GO:0046983
Gso11g2780 376 Gene3D - 195 267 IPR036638 GO:0046983
Gso11g2780 376 MobiDBLite consensus disorder prediction 81 100 - -
Gso11g2780 376 SMART finulus 202 251 IPR011598 GO:0046983
Gso11g2780 376 PANTHER BHLH TRANSCRIPTION FACTOR 35 375 - -
Gso11g2780 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Gso11g2780 376 CDD bHLH_AtNAI1_like 199 271 - -
Gso11g2780 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 260 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2780 Gso-Chr11 43578582 43581819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2780 196 376 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 60.656 1.13e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g2780 HLH 2.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2780 - - gmx:100798018 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0526 15 4730713 4734353 Gso11g2780 11 43578582 43581819 GST
Gso7g1573 7 37514158 37517004 Gso11g2780 11 43578582 43581819 PCT
Gso11g2780 11 43578582 43581819 Gso7g1573 7 37514158 37517004 PCT