Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2759 ATGCGAAGGGATCGACTCAATGACAGGTTTATGGAACTGTGGTCTATCGTGGGCCCTGGAATGCCTCTCAAAATGGACAAGGCTGTTATATTAAGTGACGCAGTTCGAGTGGTGTCTCAGTTACGAGAGGAAGCTCAAAAGCTGAGAGAGTCCTCTGAGAATCTACAAGAGAAAATTAATGAATTGAAGGCCGAGAAAAATGAGCTTCGGGATGAGAAGCAGCGACTAAAAGCAGAGAAAGATAGCATTGAGCAGAAGCTTATAGCCTTGAGTTCACAACCTAGCTTTCTGCCTGCGTTTCCTTCTGCAGGACAAGTTGTTGGTAGCAAGCTGGTGCCATTCATGGGCTATCCAGGAGTTGCCATGTGGCAGTTTTTACCACCTGCTGCTGTTGACATCTCACAGGACCATGTTCTCAGGCCCCCAGTTGCATAA 435 0.4713 MRRDRLNDRFMELWSIVGPGMPLKMDKAVILSDAVRVVSQLREEAQKLRESSENLQEKINELKAEKNELRDEKQRLKAEKDSIEQKLIALSSQPSFLPAFPSAGQVVGSKLVPFMGYPGVAMWQFLPPAAVDISQDHVLRPPVA* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2759 144 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 1 144 - -
Gso11g2759 144 SMART finulus 1 47 IPR011598 GO:0046983
Gso11g2759 144 Coils Coil 31 93 - -
Gso11g2759 144 Gene3D - 1 71 IPR036638 GO:0046983
Gso11g2759 144 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 41 IPR011598 GO:0046983
Gso11g2759 144 Pfam Helix-loop-helix DNA-binding domain 2 41 IPR011598 GO:0046983
Gso11g2759 144 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 69 IPR036638 GO:0046983
Gso11g2759 144 PANTHER BHLH TRANSCRIPTION FACTOR 1 144 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2759 Gso-Chr11 43449375 43450491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2759 2 144 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 65.132 2.74e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g2759 HLH 1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2759 - - gmx:100808803 281.952