Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2747 ATGGAGTATGAAGATGAAGATTGGCTTTGTGTCACTATGGATGAGTTTTCTCTTGCTACTGAAAATGGTTGTAACAGGAAGAGGAACTTTGATGATGACACGAAAGAGTACAAATCAAAGAACCTTGAGACTGAAAGGAGGAGGAGGGAGAAGCTCAGTAGCAGGCTTTTGATGCTGCGGTCTATAGTACCTATAATCACAAATATGAATAAAGCAATGATTGTTGAAGATGCTATCACCTACATTGAGAAGCTGCAAGACAAGGTTCAGAGTCTCAGCCAAGAGCTTCACCAAATGGAAGCAACTTCAGAGGAAACAGCAGAGACAAAAATAGTTGAAATTGATGCTGCGGAAGATATGAAGAATTGGGGGATACAGGAAGAGGTCATAGTGGAAGAAATAAACGAGAATAAACTCTGGGTTAAGATCATTGTTGAGAAGAAAAGGGGAAGATTCAGCAGATTGATGGAGGCCCTCAATAATTTTGGCATTGAACTCATTGACACCAATCTCACAACCACAAAAGGAGCATTTCTGATTACAAGCTTCATAAAGGGCAAGAACGGTGAAAGACTTGAAATTCATCAAACCAAGAATTTATTGCAAGATATCATCAATGACATATAG 627 0.3923 MEYEDEDWLCVTMDEFSLATENGCNRKRNFDDDTKEYKSKNLETERRRREKLSSRLLMLRSIVPIITNMNKAMIVEDAITYIEKLQDKVQSLSQELHQMEATSEETAETKIVEIDAAEDMKNWGIQEEVIVEEINENKLWVKIIVEKKRGRFSRLMEALNNFGIELIDTNLTTTKGAFLITSFIKGKNGERLEIHQTKNLLQDIINDI* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2747 208 PANTHER TRANSCRIPTION FACTOR DYT1 10 208 - -
Gso11g2747 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 35 102 IPR036638 GO:0046983
Gso11g2747 208 SMART finulus 42 91 IPR011598 GO:0046983
Gso11g2747 208 Pfam Helix-loop-helix DNA-binding domain 39 86 IPR011598 GO:0046983
Gso11g2747 208 Gene3D - 28 102 IPR036638 GO:0046983
Gso11g2747 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 85 IPR011598 GO:0046983
Gso11g2747 208 Coils Coil 75 109 - -
Gso11g2747 208 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2747 Gso-Chr11 43378044 43379551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2747 37 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 45.763 2.98e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g2747 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2747 - - gmx:100806159 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0549 15 4869804 4871310 Gso11g2747 11 43378044 43379551 GST