Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2740 ATGGCGGCTGAGGCTGAGCTTCCGGAGTACTTAAAGTGTCCGATTTCCCTGGAAATTATGTCCGACCCCGTCATCCTCTCTTCCGGCCACACCTTCGACCGCTCCTCCATCCAGCGCTGGCTCGACGCCGGCCATCGCACCTGCCCAATTACCAAACTGCCCCTCCCGGAACACTCTTCTCTCATCCCCAACCACGCCCTCCGAAGCTTAATCTCCAACTACGCCCCCATCAACCCTCTCATCAATAGTAGCAATTCACACCCTCAAACCCTAATCTCCACCCTCACCTCTCCCTCCTCTCCTCTCCCCTCCAAACTCCACGCGCTCCACCACCTCACGCGCCTCTCCCACTCCGACTCCCTCTTCCGCCGCCGCCTCTTCAACTCCCCCGCCCTCGTCCCCGCCCTCCTAACCTTCCTCCAACACATCTCCGCCGCCGACCTCCGCCACCGCGCCCTCTCCCTGCTCCTCCACCTCTCCCTGGACGACGACGCCAAGGTCGGCCTCGTCGCCGAGGGCCTCCTCTCCCCTTTAATCTCTCTCCTCCTCTCCTCCGCCGCCCCCTCCGACTGCCGCGCCCTCGCCGCCACCCTCCTCACCAGCCTCGCCGTCCTCCACGTCAACAAGGCCACCATCGGAGCCTTCCCGGGCTCCATCAATGCCCTCGTGACACTCCTCCGCGACGGGAAGGGAAGGGAAAGAAAAGAAGCCGCCACGGCGCTCTACGCCCTCTGCTCCTTCCCTGATAACCGGCGTAAAGCGGTGGAGTGCGGCGCCGTTCCCGTTCTGTTTCGGTGTGCCGATTCTGGACTTGAGAGGAGCGTTGAGGTTATTGGGGTTTTGTCAAAATCCAAAGAGGGGAGGGAGCAGATGGAACGGTTTTGCGGGTGTGTGCAGATTCTTACGCGCGTTTTCAGGAATGGAAGCTCCAGGGGAGTTCAGTATGCTCTTATGGCTCTTTATTCACTCTGTTGTCACAGTCAAGAAACTGTTGTCGAGGCTTTAAAAAACGGGGTTTTGGAAATATGTCAAGGGTTGGTGGAGGATGATAATGTTACGGTCAGAAGGAATTCCTCGTGTTTGGTTCAGCTTCTCCGTGGGAACACCCATCGCTTGAGTTGA 1122 0.59 MAAEAELPEYLKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPEHSSLIPNHALRSLISNYAPINPLINSSNSHPQTLISTLTSPSSPLPSKLHALHHLTRLSHSDSLFRRRLFNSPALVPALLTFLQHISAADLRHRALSLLLHLSLDDDAKVGLVAEGLLSPLISLLLSSAAPSDCRALAATLLTSLAVLHVNKATIGAFPGSINALVTLLRDGKGRERKEAATALYALCSFPDNRRKAVECGAVPVLFRCADSGLERSVEVIGVLSKSKEGREQMERFCGCVQILTRVFRNGSSRGVQYALMALYSLCCHSQETVVEALKNGVLEICQGLVEDDNVTVRRNSSCLVQLLRGNTHRLS* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2740 373 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 372 - -
Gso11g2740 373 PANTHER U BOX DOMAIN-CONTAINING 1 372 - -
Gso11g2740 373 Pfam U-box domain 8 74 IPR003613 GO:0004842|GO:0016567
Gso11g2740 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 76 IPR013083 -
Gso11g2740 373 ProSiteProfiles U-box domain profile. 6 81 IPR003613 GO:0004842|GO:0016567
Gso11g2740 373 SMART Ubox_2 10 74 IPR003613 GO:0004842|GO:0016567
Gso11g2740 373 SUPERFAMILY ARM repeat 67 363 IPR016024 -
Gso11g2740 373 SUPERFAMILY RING/U-box 5 75 - -
Gso11g2740 373 CDD RING-Ubox_PUB 13 52 IPR045210 -
Gso11g2740 373 Gene3D - 84 373 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2740 Gso-Chr11 43322994 43324622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2740 6 367 U-box Gene Family AT4G21350 54.865 1.16e-126 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2740 - - gmx:100804552 662.914