Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2739 ATGGAGAGAACAGAGTTCACCCTTTTATTTCTTGTTACTTGTTGCTATTTGCTATCCTTGTTTCCTACAGCTTTGGAAGCAGAGGATGCAATAACTCCACCACAAACCATCAGTGGCTACCAGACACTAGTCTCACCTTCCCAAAATTTTGAACTGGGTTTCTTCAGTCCTGGCAATTCCACTCACATCTATCTTGGAATATGGTACAAGCATATCCCAAAACAGACAGTTATTTGGGTTGCAAATAGAGACAAACCATTAGTTAACTCTGGTGGCTCCTTAACATTCAGCAACAATGGCAAGCTCATCCTTCTCAGCCACACAGGAAGTGTTGTATGGTCTTCAAACTCATCTGGACCTGCAAGAAACCCAGTGGCACATCTTCTAGACTCTGGAAACTTTGTGTTGAAGGACTACGGAAATGAGGGACATTTGTGGGAGAGTTTTGATTATCCATCTGACACATTGATACCAGGAATGAAGCTTGGTTGGAACTTCAAAACTGGCTTGAACCGACATTTGACTTCCTGGAAAAGCTCTTCTAATCCTTCTTCAGGTGAATACACTTACGGTGTGGATCCCCGGGGGATTCCTCAGCTTTTTCTTCACAAGGGAAACAAGAAGGTCTTCAGAAGTGGACCATGGTATGGGCAACAATTCAAAGGTGATCCAGTTCTCAGTGCAAATCCAGTTTTCAAACCCATTTTTGTTTTTGATTCTGATGAAGTGTCTTACTCTTATGAGACCAAAGACACCATTGTTTCAAGATTTGTGCTGAGTCAGTCTGGTTTGATTCAGCATTTTTCATGGAATGATCATCATTCCAGTTGGTTCTCAGAATTCTCAGTTCAAGGGGACCGCTGTGATGATTATGGCCTTTGTGGTGCATATGGTTCTTGTAACATCAAAAGCTCCCCTGTTTGCAAATGTTTGAAGGGTTTTGATCCTAAGCTTCCGCAAGAATGGGAGAAGAATGAGTGGTCAGGTGGATGTGTTAGGAAGAATTCACAGGTTTTCAGCAATGGAGACACATTTAAGCAGTTTACAGGAATGAAACTACCAGATGCTGCTGAGTTTCATACAAACTACACCATCAGCAGTGATCACTGTGAGGCAGAATGCTCCATGAACTGCTCTTGTGTTGCTTATGCCAAACTAGATGTAAATGCAAGCGGCAAAGGCTGTATTGTATGGTTTGGGGATTTATTTGATATAAGAGAGGTTTCTGTGAATGGAGAAGATTTTTACGTAAGAGTTCCAGCTTCAGAAGTAGGTAAGAAGATTAAAGGTCCAAATGTTGATGGAAACAAAAGGAAAAAACTCATACTGTTTCCTGTGACTGCATTTGTAAGTTCAACAATTATTGTATCAGCATTATGGTTGATAATTAAGAAATGCAGAAGAAAAAGAGCCAAAGAGACAGATAGTCAGTTTAGTGTTGGCAGAGCTAGGAGTGAAAGAAATGAATTTAAACTCCCATTGTTTGAGATTGCCATAATTGAAGCCGCAACCGAGAATTTCTCTCTTTACAACAAGATTGGAGAAGGAGGATTTGGTCATGTATACAAAGGTCAACTTCCATCAGGACAGGAAATAGCTGTGAAGAGGCTGTCAGAGAATTCTGGACAAGGCCTGCAGGAGTTCAAGAATGAGGTCATTTTGATCTCCCAACTTCAGCATCGAAATCTTGTCAAGCTTCTGGGATGTTGCATTCATGGAGAAGATAAAATGTTGGTCTACGAATACATGCCAAACAGAAGCTTGGACTCCTTATTATTTGATGAAACCAAGCGTTCTGTGCTCAGTTGGCAAAAGAGGCTAGACATAATTATCGGCATTGCTCGGGGACTTCTCTACCTTCACAGAGATTCAAGATTGAGAATAATCCATAGAGACCTGAAAGCAAGCAATGTTCTTTTAGATGGTGAAATGAACCCAAAAATTTCTGACTTTGGAATGGCAAGAATGTTTGGGGGTGATCAAACTGAAGCAAAGACCAAGAGAATAGTGGGAACCTATGGATATATGTCCCCAGAGTATGCAATAGATGGACACTTCTCTTTCAAATCAGATGTTTATAGCTTTGGGGTTTTACTCTTGGAGCTGTTGAGTGGCAAGAAAAACAAAGGATTTATTCACCCAGATCACAAACTGAATCTCCTAGGCCATGCATGGAAGCTATGGAATGAAGATAGGGCCTTGGAGCTGATGGATGCATTGCTTGAGAATCAGTTTCCTACATCTGAAGCTCTAAGGTGTATTCAAGTGGGTCTGTCATGCATTCAACAGCACCCAGAAGATAGGCCAACAATGTCATCAGTGCTTTTGATGTTCGACAGTGAGAGTGTGTTGGTCCCCCAACCTGGAAGGCCAGGATTATATTCCGAGAGATTTTTCTCTGGGACAAATTCATCATCACGTGGTGGACTGAACTCTGGTTCCAATGACATAACTGTTACTTTAGTAGAGGGTCGTTGA 2478 0.4149 MERTEFTLLFLVTCCYLLSLFPTALEAEDAITPPQTISGYQTLVSPSQNFELGFFSPGNSTHIYLGIWYKHIPKQTVIWVANRDKPLVNSGGSLTFSNNGKLILLSHTGSVVWSSNSSGPARNPVAHLLDSGNFVLKDYGNEGHLWESFDYPSDTLIPGMKLGWNFKTGLNRHLTSWKSSSNPSSGEYTYGVDPRGIPQLFLHKGNKKVFRSGPWYGQQFKGDPVLSANPVFKPIFVFDSDEVSYSYETKDTIVSRFVLSQSGLIQHFSWNDHHSSWFSEFSVQGDRCDDYGLCGAYGSCNIKSSPVCKCLKGFDPKLPQEWEKNEWSGGCVRKNSQVFSNGDTFKQFTGMKLPDAAEFHTNYTISSDHCEAECSMNCSCVAYAKLDVNASGKGCIVWFGDLFDIREVSVNGEDFYVRVPASEVGKKIKGPNVDGNKRKKLILFPVTAFVSSTIIVSALWLIIKKCRRKRAKETDSQFSVGRARSERNEFKLPLFEIAIIEAATENFSLYNKIGEGGFGHVYKGQLPSGQEIAVKRLSENSGQGLQEFKNEVILISQLQHRNLVKLLGCCIHGEDKMLVYEYMPNRSLDSLLFDETKRSVLSWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKASNVLLDGEMNPKISDFGMARMFGGDQTEAKTKRIVGTYGYMSPEYAIDGHFSFKSDVYSFGVLLLELLSGKKNKGFIHPDHKLNLLGHAWKLWNEDRALELMDALLENQFPTSEALRCIQVGLSCIQQHPEDRPTMSSVLLMFDSESVLVPQPGRPGLYSERFFSGTNSSSRGGLNSGSNDITVTLVEGR* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2739 825 SMART ntp_6 340 419 IPR003609 -
Gso11g2739 825 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 19 823 - -
Gso11g2739 825 ProSiteProfiles EGF-like domain profile. 284 320 IPR000742 -
Gso11g2739 825 ProSitePatterns Protein kinases ATP-binding region signature. 513 535 IPR017441 GO:0005524
Gso11g2739 825 SUPERFAMILY Protein kinase-like (PK-like) 491 788 IPR011009 -
Gso11g2739 825 PIRSF SRK 1 825 IPR024171 GO:0004674
Gso11g2739 825 CDD STKc_IRAK 513 779 - -
Gso11g2739 825 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Gso11g2739 825 ProSiteProfiles PAN/Apple domain profile. 331 420 IPR003609 -
Gso11g2739 825 Gene3D - 23 149 IPR036426 -
Gso11g2739 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 183 IPR036426 -
Gso11g2739 825 SMART blect_4 34 152 IPR001480 -
Gso11g2739 825 ProSiteProfiles Protein kinase domain profile. 507 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2739 825 CDD PAN_AP_plant 340 420 - -
Gso11g2739 825 ProSiteProfiles Bulb-type lectin domain profile. 28 149 IPR001480 -
Gso11g2739 825 CDD B_lectin 35 152 IPR001480 -
Gso11g2739 825 Gene3D Phosphorylase Kinase; domain 1 465 582 - -
Gso11g2739 825 Pfam Protein tyrosine and serine/threonine kinase 509 775 IPR001245 GO:0004672|GO:0006468
Gso11g2739 825 Pfam D-mannose binding lectin 76 178 IPR001480 -
Gso11g2739 825 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 823 - -
Gso11g2739 825 SMART serkin_6 507 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2739 825 Pfam PAN-like domain 340 405 IPR003609 -
Gso11g2739 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Gso11g2739 825 Gene3D Transferase(Phosphotransferase) domain 1 583 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2739 Gso-Chr11 43315575 43319481 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2739 442 814 Receptor kinase-like Gene Family AT4G05200 53.619 8.80e-129 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g2739 PK_Tyr_Ser-Thr 7.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2739 - - gmx:100804024 1684.85