Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2724 ATGGGGAAAAAATCGAATCCGGCGGAGGGAGAAGAAGCGGTGCCGGAGCATCTGCGGTGCAGCCGTACGGACGGGCGGCAATGGCGGTGCCGGCGGCGAGTGAAGGAAAACCTAAAGCTGTGCGAGATTCACTATGTGCAAGCTCGGCGTCGGCAGCACAAGAAGACGCTGAAGCTGAAGAGAAAGAGGCAAAACGACGCCGTTGAGGCTCAGATTGGGGCAAAGCGGGACCGAAAATCGAGAGAGGCATTGGTGAATAGGAGGAACCAATTGGAGCTCATAAGGATGGTTCTGCAGAGAGAGGTTGAGAAGAAGAAGAAGAAGGAATCGCAATTGAATTTGAATTTGAATTTGCATTTGTATTCCAATCACGAGTTGAAGAAGGAACTTCCGAATGGTGTTATGGCTATTGCGTCCAATGTGGCTTCTTCTCGTTACTTCAGGTCCAAGAATGCTGACAGCGGCTCTGTTAGTAAGTTGCAGTGTGGACGAAGCATGAACAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGGAGTCTTGTAATGTGTTCAAGCTGCCAGAGAGAGTTTTTCTGCATGGAGTGCATTAAACAACGGTATTTTGATACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGTCGAGGAACTTGCACCTGTAAAGATTGCTTGTCAAGTCAATACGAAGACAGTGAAAGTAAGGAATATTTGGCTGGTAAAAACAGAGTTGATGGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCTGTACTAAAACAAATAAAAGAAGACCACCATGTAGATGTAGAAGAAACAGCAAAAACTAAAGGCAAAAGAACTTCTGATATTCTCATCAAGCCGGTTGATTTTGTCTGCAACGAGAAAAATTACTGCAATTACTGCAAAACACCCATTTTGGATCTTCATAGAAGCTGCCTTAGTTGTTCCTACAGTCTTTGCTTAAGTTGTTCTCAGGCATTAAGTCAAGGAAGCACCTCTGAAGAAATCAACTCTTCTATATCCAACCTACCTGACAAAATAAATGCATGCATTTCTAGTGAAAGTCACCTTTTGGATGATAAGGTCATTTCTAATGGAAATTTAACTGATACCTCAACATTACTTGAGTGGACAAATTGTAATGGTGCTGGCATTGTGTCATGCCCACCTACAAAGCTTGGTGATTGTGGTGATAACCACCTTGATTTGAAATATGTCTTTCCCTTAAGTTGGATCAAAGAAATGGAAGTAAAGGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTCGGATAAAAGTTCGAGCTGCTCACTGTGTGTTGACAAAGATCATAAAACTAGCAGATACAAGCAGTTACCGGAAGCAGCTCAAAGAGAAGATTCCAATGATAATTACTTATTTTATCCTACAATTTTGGACATCAGTTGCAATCATTTTGAACACTTTCGGAAACACTGGGGAAAAGGCCATCCTGTAGTAGTGCGAGATGTGCTCCAATGTACACCAAACCTTAGTTGGGATCCAGTGGTCATGTTCTGTACTTATCTTGAGAGGAGCATGACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGACTGGTTTGAGGTGGAGATTAACGTTAGTCAGTACTTTATTGGGCCACTTAAATGTCAACCTCAGAAAAATACTTGGCATGAGATGTTGAAACTTAAAGGATGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGAAGTAATTGATGCTCTTCCGATTCAAGAATACATGAATCCCTTGTCTGGTCTTCTGAATTTAGCTGCAAATTTGCCACAGGGGAGTACAAAACATGACATAGGACCATATGTTTATATTTCATATGGCTGTGCTGACGAAGGAGATGATTTCGTGACAAATCTCTGTTACGACTCATATGATATGGTTAATATTATGGCATATAGCATGGACATTCCTCTCTCTACAGATCAACTTGCTAAAATAAGTAAGTTGTTGAAAAAACACAAAACTCTATGTCAGAAGGTGTCATCTAAAACTACTAGTGAGCATTCAGAAGACAGGGAACAAAATGGAATGCATAGTATAGTAAAAGAAGGAACTGACTTTCTCAGGAGAGTCAATAGAACATCTTCCATCTCTACTGAAGCCAAAACGATATCTAATCAGAAGTTAGACACCAATATTTCTGATGATGAAGAATGTGGTTCCGATTCTGAAACTGAAAAGGCACAAAGCTCTTTACCTTCCCACAGGAGGGTTCTAAGCACTGAACGGTCTCCAGATCATAATCCTAGAAATCCCTTTGAAAACTCAAACAGTGATAAAGGGAAGAAGTTTACTGAGAATTCTGCTGCTCATTGGGATGTCTTTCGAAGACAAGATGTGCCCAAGCTCTTAGAATACCTCAAAAGACACTCTGATGAATTTTCTTATACTAGTGAATGTCATGAGAAGATGGTTCATCCAATTCTGGATCAGAGCTTCTTTCTTGACAATACTCACAAGATGAGACTTAAGGAGGAGTTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTACATGTGGAATTGGAATTTGTGTCCCCTGAGAATGTCTCCGAGTGTATCCAGTTGATTGATGAGGTCCGGCTGCTTCCTGAAGACCATAAAGCAAAAGTAGAAAAGCTGGAGGTGAAAAAAATGGCTCTTTATAGCATGAGTACAGCAATAAAAGAAATACGTGAGCTTACATGCAAAACATGA 2847 0.4074 MGKKSNPAEGEEAVPEHLRCSRTDGRQWRCRRRVKENLKLCEIHYVQARRRQHKKTLKLKRKRQNDAVEAQIGAKRDRKSREALVNRRNQLELIRMVLQREVEKKKKKESQLNLNLNLHLYSNHELKKELPNGVMAIASNVASSRYFRSKNADSGSVSKLQCGRSMNKGRRKKCHWCQRSDSWSLVMCSSCQREFFCMECIKQRYFDTQNEVKMACPVCRGTCTCKDCLSSQYEDSESKEYLAGKNRVDGILHFHYLVCMLLPVLKQIKEDHHVDVEETAKTKGKRTSDILIKPVDFVCNEKNYCNYCKTPILDLHRSCLSCSYSLCLSCSQALSQGSTSEEINSSISNLPDKINACISSESHLLDDKVISNGNLTDTSTLLEWTNCNGAGIVSCPPTKLGDCGDNHLDLKYVFPLSWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCVDKDHKTSRYKQLPEAAQREDSNDNYLFYPTILDISCNHFEHFRKHWGKGHPVVVRDVLQCTPNLSWDPVVMFCTYLERSMTRYENNKDLLEACLDWFEVEINVSQYFIGPLKCQPQKNTWHEMLKLKGWLSSQLFKEQFPAHFAEVIDALPIQEYMNPLSGLLNLAANLPQGSTKHDIGPYVYISYGCADEGDDFVTNLCYDSYDMVNIMAYSMDIPLSTDQLAKISKLLKKHKTLCQKVSSKTTSEHSEDREQNGMHSIVKEGTDFLRRVNRTSSISTEAKTISNQKLDTNISDDEECGSDSETEKAQSSLPSHRRVLSTERSPDHNPRNPFENSNSDKGKKFTENSAAHWDVFRRQDVPKLLEYLKRHSDEFSYTSECHEKMVHPILDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVHVELEFVSPENVSECIQLIDEVRLLPEDHKAKVEKLEVKKMALYSMSTAIKEIRELTCKT* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2724 948 PANTHER PROTEIN B160 11 947 - -
Gso11g2724 948 MobiDBLite consensus disorder prediction 693 712 - -
Gso11g2724 948 SMART cupin_9 588 911 IPR003347 -
Gso11g2724 948 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 11 947 IPR045109 GO:0032454|GO:0033169
Gso11g2724 948 Pfam JmjC domain, hydroxylase 797 894 IPR003347 -
Gso11g2724 948 ProSiteProfiles Zinc finger RING-type profile. 174 220 IPR001841 -
Gso11g2724 948 MobiDBLite consensus disorder prediction 737 792 - -
Gso11g2724 948 ProSiteProfiles WRC domain profile. 14 58 IPR014977 -
Gso11g2724 948 SUPERFAMILY Clavaminate synthase-like 481 931 - -
Gso11g2724 948 Pfam WRC 15 55 IPR014977 -
Gso11g2724 948 Coils Coil 81 108 - -
Gso11g2724 948 Gene3D Cupin 480 920 - -
Gso11g2724 948 MobiDBLite consensus disorder prediction 689 712 - -
Gso11g2724 948 ProSiteProfiles JmjC domain profile. 607 911 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2724 Gso-Chr11 43188624 43194546 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso11g2724 JmjC 2.5e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2724 K15601 - gmx:100799234 1922.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0573 15 5067769 5073483 Gso11g2724 11 43188624 43194546 GST
Gso7g1608 7 37870999 37877187 Gso11g2724 11 43188624 43194546 PCT
Gso8g0505 8 4671911 4678434 Gso11g2724 11 43188624 43194546 PCT
Gso11g2724 11 43188624 43194546 Gso7g1608 7 37870999 37877187 PCT
Gso11g2724 11 43188624 43194546 Gso8g0505 8 4671911 4678434 PCT