Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2719 ATGGGTGACGAACAACCGTCGACCACCGCCGTCTCCGGTCTCCGTCGAGTCATCACGCTCATCTCTTCCTTGATCTCCCTCTCCCTCTCGATCAGAGTCTTCGCCGGAAAGTGGCAACTTATCCGGAGCAGGCTGGAGGAACTCCACTCGGCCCTCGTCGCCGGAGATGCCACGTCACTCTCCGGCGAGCTCCCGGCGATAACGGGCACGGCGGAGGAGTGCCACGAGCTGGCGCGGCGGTGCTTGGATCTGTCCTACAGCGGAAAGCTTCTTATGCAGAGCGACTTGGACGTGACATTGGGAAAGTTGGAAGCTCACGTCAAGAAGCTATCTGAGATATTCAAGAAGAATGTGTCGATGCATGGCTATGCCGTTGTGGTTTCAAGGCCTGGCTTTGGAGCTTGCAAAGATGACATGAGGTTCTACTTAAGGGACTTATTGACTCGAATGAAGGTTGGTGATTTGGGTATGAAGAAGCAGGCTTTGGTGAACTTGCATGAGGTGGTTGTGGAGGATGAAAAGTATGTGAAGTTGGTTGCTGAGGTTTCTGAGTTTGTTCACGTGTTGGTGGATTTTCTAGGTTGCAATGAGGTTGAGGTTGTGGAGGAGGCTGCCAAGGTTGTTTCTTTGGTTGCCGGGTTTGATTCTCATAAAGGGGTTTTGGTCAGTGCTGGGGTTATTGCCCCTTTGATTCGGGTTTTGGAATGTGGGAGTGAGGTAGGGAAGGTTGGTGCTGCGAGGTGTTTGCAAAGGTTGACCGAGAATTCGGATAATGCGTGGTGTGTTTCGGCTCATGGGGGTGTCACTGCTTTGTTGAGGATTTGTGAGAGTGTGGAGTGTAAAGGGGAATTGGTTGGTCCTGCTTGTGGGGTGTTGAGGAATCTCTGTGGTGTTGAGGAAATCAAGAGGTTTATGGTTGAGGAGGGTGTGGTTTCCACTTTTGTGAGGCTTGTGAGGTCTAAGGATGAAACAGTTCAGGTGAGTTCTATTGAGTTGATTAAGAACATTGCCTCTGATGATGATTTGGTTAGGCAGATGGTGGTTAAAGAAGGAGGGGTTCGTGTTCTTTTGCGTGTTTTGGATCCTAAGTGGACTTGTTCGTCCAAAATAAGAGAGGTTGTGATGAGGGCTATTGAGAATTTGTGTTTTTCTTCGCCTAGTTGTGTTAGTGTTTTGCTGAGTTATGGTTTTGTGGATCAATTGATGTATTATGTGAGAAATGGGGAGGCTTTGGTTCAGGAGTTGGCGCTGAAGGTGGCGTTTAGATTCTGCGAAACATCGGAGGAGGCTAAGAAGGCGTTGGGCGATGCCGGCTTCATGGCTGAGCTTGTGAAGTTTCTGAATGCCAAATCATTTGAAGTTAGAGAAATGGCAGCAGAGGCACTCTCTGGAATGGTTATGGTGGCAAAAAATAGGAAGAGGTTTGTGCAGGATGACCAAAACATTGCTCTTCTTCTGCAATTGCTGGATCCAGGGGAGGGCAATTCAGGTAACAAAAAGTTGTTGATCTCTATCTTGATGTCACTAACAAGTTGCAACAGTGGGAGGAAAAAAATTGTGAGTTCCGGGTATGCCAAAAACATAGAGAGGCTTGCAGAAGCTGAGGTTTCTTCTGATGCCAAGAGGCTTGTGAGGAAGCTATCCACAAACCGGTTCCGCAGTATGTTGAATGGAATCTGGCACTCTTGA 1689 0.4849 MGDEQPSTTAVSGLRRVITLISSLISLSLSIRVFAGKWQLIRSRLEELHSALVAGDATSLSGELPAITGTAEECHELARRCLDLSYSGKLLMQSDLDVTLGKLEAHVKKLSEIFKKNVSMHGYAVVVSRPGFGACKDDMRFYLRDLLTRMKVGDLGMKKQALVNLHEVVVEDEKYVKLVAEVSEFVHVLVDFLGCNEVEVVEEAAKVVSLVAGFDSHKGVLVSAGVIAPLIRVLECGSEVGKVGAARCLQRLTENSDNAWCVSAHGGVTALLRICESVECKGELVGPACGVLRNLCGVEEIKRFMVEEGVVSTFVRLVRSKDETVQVSSIELIKNIASDDDLVRQMVVKEGGVRVLLRVLDPKWTCSSKIREVVMRAIENLCFSSPSCVSVLLSYGFVDQLMYYVRNGEALVQELALKVAFRFCETSEEAKKALGDAGFMAELVKFLNAKSFEVREMAAEALSGMVMVAKNRKRFVQDDQNIALLLQLLDPGEGNSGNKKLLISILMSLTSCNSGRKKIVSSGYAKNIERLAEAEVSSDAKRLVRKLSTNRFRSMLNGIWHS* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2719 562 Gene3D - 143 551 IPR011989 -
Gso11g2719 562 SUPERFAMILY ARM repeat 144 544 IPR016024 -
Gso11g2719 562 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 5 562 - -
Gso11g2719 562 SMART arm_5 172 213 IPR000225 GO:0005515
Gso11g2719 562 SMART arm_5 214 254 IPR000225 GO:0005515
Gso11g2719 562 SMART arm_5 298 338 IPR000225 GO:0005515
Gso11g2719 562 SMART arm_5 255 297 IPR000225 GO:0005515
Gso11g2719 562 SMART arm_5 339 383 IPR000225 GO:0005515
Gso11g2719 562 SMART arm_5 427 467 IPR000225 GO:0005515
Gso11g2719 562 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 5 562 - -
Gso11g2719 562 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 266 310 IPR000225 GO:0005515
Gso11g2719 562 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 309 352 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2719 Gso-Chr11 43134416 43136794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2719 126 416 U-box Gene Family AT2G23140 23.549 6.89e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2719 - - gmx:100783537 1052.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0580 15 5115096 5117284 Gso11g2719 11 43134416 43136794 GST
Gso7g1613 7 37952164 37954662 Gso11g2719 11 43134416 43136794 PCT
Gso8g0500 8 4600878 4603417 Gso11g2719 11 43134416 43136794 PCT
Gso11g2719 11 43134416 43136794 Gso7g1613 7 37952164 37954662 PCT
Gso11g2719 11 43134416 43136794 Gso8g0500 8 4600878 4603417 PCT