Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso11g2693 | ATGATGGCAAACGAGGTTTTTGATTACCCGTATCTCTTGGGCGACGACGGAGACGTCGCCAACGACGATAAGCTCTGCATCGATTTGGACACTGTTATGAGCGTTCTCGACGAGGACACCAATCCTTCCGAGAGTAGTCCTGAGGATTTTTCATTGAAAAATAATTCTCCTGGTGAAGCTGGCCTCCATGATAATTTTCTACTTCAAAATGGGAATTATGTCCTTGAATGTAAACATGAAAACCAGGGGCCTTCATCACAGATTTTTTCTTCCCCAAATGCTCTTGCTGGTGGTTTCAGGGACTCCTCCATGGTTGAAAGTGATGAAAATTGCTTCACAGAAATGACAGAAGTTTCTAATTGTGAGTTGCCTGCTTACATTGCAGACAGAAGGTTCCCTGTTCCTGAGGCGATTTCAAGCTGTGCAGCTGTCTGTGGAGATAATTTGAACCTGACTCCGTGGAAGCGTGAAAATGACAGCCAAATCAAGCATATAGGATATGATGCACAATCTGAATATGCTTCACATGGCTCTATCATTGAGAATATTGATTTAAATTTTGGAGATTATGAAACATATATGGAAGACATTATTGGATTTTCTGGTAAACAAGAAAATGACTCATGTACATCTTTTGAAATGTCGTATGTGGATGCTGCTGATAGATCTTCACATGTTGCAACTTCAACTGATTCTTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTGACTATTATCCATCTTTGAATTGTTACCAAGGTATGGATGATAGACCTGTTGTTGCCAACAGTTCTGGTCGTTTGTCTAATGGTGTTTATCCTCACGTGCGGAAAAATGAAGAAATGATGAAGAACATGAAGGTTGCTAAAATGGAGTTATTTGCTGATACAAGTAGTGGCATGCATTCCGGCATTAATGGTGGGATATCTTTTCAAGATAGTCGATTTAGGTTTGCAGATAGTAAATATGCATCATCTTTTCCCGGTAATGTTCTCTTTGAAGACAATGCGTCAGTGCAACTTTCAAATTGTTGTTCATATATTTCGAGTGAAGTTCAATCACTTAATGTCAAAGCCGAAAGAGACGAACGGGTTATGCCTTACCAAAACTCTGTTCACAGTGATGATGCTGAGTTCAGTGTAGGTCAAGAGATGAAACAACTATCTGGTATTTTCCCTGCTGTTGGATGTCAGGGTAATGATTTCTTTAACTGCGAGGATGGGGTTACAATTGCAACAACTCAGAAAGCCAAATATTATCAAGATGGTGTCGATGGAGCTGCCAATAACTTTCCAGGAAACATGGGAAATTTGAATTTAAAACCATTAGACAAATCTTTGTATAATGCCCAGACATCTATTGCCAGTGGGAAGCAGTATAATTGTGTTATGAGTGAAGGAGAGGGCAAAGTAATCGAACATAGAAGTATTGATTCTCATCTTTCAAAAGGAAGTATTGAGACATCTAATACTGAAGACATCAATCACCCTGCACTTATAAGTCGATCAGCAGAGCTTGGGAATTCCCTTATTACATCAGAATCTTCTAGAGGGGGTTATACTCATTCTTATATGGCGGGAAGTGTGAGGCCCAAGGCACGTGACGAGCAGTACATATTACGAGTTGCATTGCAGGATCTATCCCAACCAAAGTCAGAGATTAGTCCACCAGATGGTCTGCTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTCTATCATGGATGGTTCAGAAGGAAACGTCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCAACCATAGCTTTAATATTAAAGGAAAGACCTCCATTGCTGAATAAGTGCAGGAATGCCCAAAAATTTGAATTAGAAACTTTGAATCTGGATGCAGATGATGATCAGCTTCCTGAGAATGGAATAGTAAAGAACGAATCTAATATGTGTCAGGATTTGTCTAGTAGAAATCCAAACCAGAACATGAATTTGTTAGTGCCTGCGAAGGGAAGGCCATCTGCAGGAACCCTTATTGTTTGTCCAACAAGTGTCCTGCGGCAATGGGCCGAGGAGTTGCACAATAAGGTAACCTGCAAAGCAAAACTCTCTGTGCTAGTATATCATGGAAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAATATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTTCCTAAGCAGCCTCTTGTTGACAAAGATGATGAAGAAAAAGGAACTTATGATGATCATGCAATATCAAGTAAGAAAAGGAAATGCCCTCCTAGTTCTAAAAGTGGAAAGAAGCGATTGGACAGTGCGATGCTTGAGGCTGTTGCTCGTCCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCCAAGCGTAGATGGTGCTTGTCGGGGACTCCTATCCAGAATGCAATTGACGATCTCTATAGTTACTTTAGATTTTTAAGATATGATCCTTATGCTGTGTACACTTCATTCTGTTCCACAATTAAGATCCCTATCAGCAGAAGTCCATCAAAAGGATACAGAAAGCTACAAGCTGTCTTAAAAACAATAATGTTACGTCGGACAAAAGGCTCACTTCTTGATGGGGAGCCTATCATTTCCTTGCCACCTAAATCTGTAGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGAGATTTTTATTCCAAACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAACTATGTTAACATTTTGTTGATGCTTTTGCGCCTTAGACAAGCGTGCGATCATCCTCTGCTTGTCAAACGTTACAATTCTAACTCTCTCTGGAAATCCTCAGTTGAGATGGCAAAGAATCTTCCTCAGGAAAAACGATTATCTCTTTTAAAATGTTTGGAGGCATCCTTGGCCCTCTGTGGTATCTGTAATGACCCTCCTGAATATGCTGTTGTTTCAGTTTGTGGACATGTTTTTTGTAACCAGTGCATTTGTGAACATCTTACTGGTGATGACAATCAGTGCCCTGCTACAAACTGCACAACCCGACTAAGCATGTCTTCAGTGTTTTCCAAAGTCACACTGAATAGTTCTTTTTCTGAACAGGCTGGTGATAATTTGCCTGATTACTCTGGTTGTGAAGTGGAGGAATCTGAGTTTTTTTCTCAGGCTCAGCCATGCAATTCTTCAAAAATAAAGGCTGCACTTGAGGTGTTGCAGTTGTTGTCTAAACCACAATGCTGTGCTTCCCAAAACAATTCTGTGCAGAGCACTTCTGGGGAAAGTACTGATGGCCTTGGTAGTTCATCTAGTGCTGACAGAATGAAATCCTTAAATGAAATTCCCGAGAGTCAAAATGTGTTTGAGGAGAGAAGCTCTAATAATTCAGTCGGTGTAGGAGAGAAAGCTATAGTGTTTTCTCAGTGGACAAGGATGCTAGATTTACTTGAAGCATGTCTTAAGAATTCTTCAATCCAGTATAGAAGACTGGATGGAACAATGTCAGTCACTGCAAGAGATAAAGCTGTCAAAGATTTTAACACTCTCCCTGAGGTTTCAGTTATGATTATGTCTTTAAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCCTGCCATGTTCTTATGCTAGATCTATGGTGGAATCCTACAACTGAAGATCAGGCAATAGACCGAGCCCATCGAATTGGACAAACTCGTCCTGTCACAGTTTTACGGTTAACCGTTAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCGAACAATGGTTGCATCTGCCTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGA | 3960 | 0.4088 | MMANEVFDYPYLLGDDGDVANDDKLCIDLDTVMSVLDEDTNPSESSPEDFSLKNNSPGEAGLHDNFLLQNGNYVLECKHENQGPSSQIFSSPNALAGGFRDSSMVESDENCFTEMTEVSNCELPAYIADRRFPVPEAISSCAAVCGDNLNLTPWKRENDSQIKHIGYDAQSEYASHGSIIENIDLNFGDYETYMEDIIGFSGKQENDSCTSFEMSYVDAADRSSHVATSTDSSICQGSNVPNDFSDYYPSLNCYQGMDDRPVVANSSGRLSNGVYPHVRKNEEMMKNMKVAKMELFADTSSGMHSGINGGISFQDSRFRFADSKYASSFPGNVLFEDNASVQLSNCCSYISSEVQSLNVKAERDERVMPYQNSVHSDDAEFSVGQEMKQLSGIFPAVGCQGNDFFNCEDGVTIATTQKAKYYQDGVDGAANNFPGNMGNLNLKPLDKSLYNAQTSIASGKQYNCVMSEGEGKVIEHRSIDSHLSKGSIETSNTEDINHPALISRSAELGNSLITSESSRGGYTHSYMAGSVRPKARDEQYILRVALQDLSQPKSEISPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLNKCRNAQKFELETLNLDADDDQLPENGIVKNESNMCQDLSSRNPNQNMNLLVPAKGRPSAGTLIVCPTSVLRQWAEELHNKVTCKAKLSVLVYHGSNRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGTYDDHAISSKKRKCPPSSKSGKKRLDSAMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRSPSKGYRKLQAVLKTIMLRRTKGSLLDGEPIISLPPKSVELKKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKNLPQEKRLSLLKCLEASLALCGICNDPPEYAVVSVCGHVFCNQCICEHLTGDDNQCPATNCTTRLSMSSVFSKVTLNSSFSEQAGDNLPDYSGCEVEESEFFSQAQPCNSSKIKAALEVLQLLSKPQCCASQNNSVQSTSGESTDGLGSSSSADRMKSLNEIPESQNVFEERSSNNSVGVGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVTARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRTMVASAFGEDGTGGRQSRLTVDDLKYLFMM* | 1320 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso11g2693 | 1319 | MobiDBLite | consensus disorder prediction | 37 | 56 | - | - | |
Gso11g2693 | 1319 | Gene3D | - | 1058 | 1318 | IPR027417 | - | |
Gso11g2693 | 1319 | SMART | ultradead3 | 563 | 865 | IPR014001 | - | |
Gso11g2693 | 1319 | MobiDBLite | consensus disorder prediction | 743 | 776 | - | - | |
Gso11g2693 | 1319 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 997 | 1055 | IPR013083 | - | |
Gso11g2693 | 1319 | Gene3D | - | 777 | 889 | IPR038718 | - | |
Gso11g2693 | 1319 | Gene3D | - | 661 | 753 | IPR038718 | - | |
Gso11g2693 | 1319 | PANTHER | HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 | 490 | 1318 | - | - | |
Gso11g2693 | 1319 | SMART | helicmild6 | 1178 | 1261 | IPR001650 | - | |
Gso11g2693 | 1319 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 552 | 888 | IPR027417 | - | |
Gso11g2693 | 1319 | ProSitePatterns | Zinc finger RING-type signature. | 1019 | 1028 | IPR017907 | - | |
Gso11g2693 | 1319 | Pfam | Zinc finger, C3HC4 type (RING finger) | 1004 | 1040 | IPR018957 | GO:0046872 | |
Gso11g2693 | 1319 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1144 | 1314 | IPR001650 | - | |
Gso11g2693 | 1319 | CDD | SF2_C_SNF | 1164 | 1271 | - | - | |
Gso11g2693 | 1319 | MobiDBLite | consensus disorder prediction | 743 | 764 | - | - | |
Gso11g2693 | 1319 | Pfam | SNF2-related domain | 587 | 965 | IPR000330 | GO:0005524|GO:0140658 | |
Gso11g2693 | 1319 | MobiDBLite | consensus disorder prediction | 1115 | 1137 | - | - | |
Gso11g2693 | 1319 | SMART | ring_2 | 1004 | 1042 | IPR001841 | - | |
Gso11g2693 | 1319 | ProSiteProfiles | Zinc finger RING-type profile. | 1004 | 1043 | IPR001841 | - | |
Gso11g2693 | 1319 | PANTHER | TRANSCRIPTION TERMINATION FACTOR 2-RELATED | 490 | 1318 | - | - | |
Gso11g2693 | 1319 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 582 | 850 | IPR014001 | - | |
Gso11g2693 | 1319 | CDD | DEXDc_SHPRH-like | 567 | 888 | - | - | |
Gso11g2693 | 1319 | Gene3D | - | 538 | 628 | IPR038718 | - | |
Gso11g2693 | 1319 | MobiDBLite | consensus disorder prediction | 37 | 53 | - | - | |
Gso11g2693 | 1319 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 896 | 1318 | IPR027417 | - | |
Gso11g2693 | 1319 | SUPERFAMILY | RING/U-box | 1001 | 1048 | - | - | |
Gso11g2693 | 1319 | Pfam | Helicase conserved C-terminal domain | 1162 | 1261 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso11g2693 | Gso-Chr11 | 42888243 | 42897611 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso11g2693 | 347 | 1318 | RAD5 or RAD16-like Gene Family | AT1G61140 | 54.921 | 0.0 | 979 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Gso11g2693 | SNF2_N | 6.3e-68 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso11g2693 | - | - | gmx:100792901 | 2410.95 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso15g0605 | 15 | 5361468 | 5370247 | Gso11g2693 | 11 | 42888243 | 42897611 | GST | |
Gso7g1633 | 7 | 38231820 | 38240571 | Gso11g2693 | 11 | 42888243 | 42897611 | PCT | |
Gso11g2693 | 11 | 42888243 | 42897611 | Gso7g1633 | 7 | 38231820 | 38240571 | PCT |