Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2690 ATGTATAGCATGGATTCATCATCTTCTGGATCTCAGTTTTCTCAGCACCCACAACTCCCTCCAGGGTTTCGATTCCACCCCACAGATGAAGAGCTAGTGGTTCAGTACCTCAAGAAAAAAGCAGACTCTGTTCCTCTTCCTGTTTCCATCATCGCCGAGGTTGATCTCTACAAGTTTGACCCATGGGAACTCCCAAGTAAAGCAACTTTTGGTGATCAAGAATGGTACTTTTTCAGCCCAAGGGATAGGAAATACCCAAATGGGACAAGGCCTAACAGAGCTGCTACTTCTGGGTATTGGAAAGCAACCGGAACTGACAAGCCCATACTTGCATCTCATGGTCACCACAACAAAGTTGGAGTCAAGAAATCACTTGTTTTCTATGGTGGAAAGCCTCCAAAAGGTGTTAAAACCAATTGGATCATGCACGAGTACAGGCTTGCTGATAGCTCCTCAAACTCTAGCTCAAAACCTCCTTCTTCGGCTTCAGATCATGCACACAGTGGCAAGAAAAACTCCTTGAGGCTTGATGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAGTACCCACCTGCCAAGGTTACCTTTGATGGAGCAGAATAAGGAGATTTCTAGGGAGATTTCTATGCTACCAATGATGTCAACTTTGTCAATGGCTAATGATAACAACACTCCTCAGGATTCCAAAACTGCGTCTTCTAGAAGCACAAGTTATGGACCCCTTGGAGTAGAAAATGATGATAATTTCTTTGATGGAATCTTTGGAGTTGATCATCAGAGCATGCAGCAAGATGTTTCTGATCATTCCCAACAAGTGTCTTCAAAGGGAAACTTCCCTATGAAAAGGGAACTTTCGTCACAGTTTTGGAATGGCACAGGGTCATCCTCTTCAAGCAGGCAATTCCATTACGATCTTAATTATGCTGGAAACAGCACTACTGTTGAGGAAGACAATTCCTTCGTTTCTCTGCTTAGCCACCTTCCACAGAACACAACAACGTTTCACCCAAATGCGCTTCTTGGCCCTGTTGGTAATGGTGTATTGAGGCAACAGTTTCAACTTCCAAGCATGAATTGGAATACTTAG 1092 0.4359 MYSMDSSSSGSQFSQHPQLPPGFRFHPTDEELVVQYLKKKADSVPLPVSIIAEVDLYKFDPWELPSKATFGDQEWYFFSPRDRKYPNGTRPNRAATSGYWKATGTDKPILASHGHHNKVGVKKSLVFYGGKPPKGVKTNWIMHEYRLADSSSNSSSKPPSSASDHAHSGKKNSLRLDDWVLCRIYKKSNSTHLPRLPLMEQNKEISREISMLPMMSTLSMANDNNTPQDSKTASSRSTSYGPLGVENDDNFFDGIFGVDHQSMQQDVSDHSQQVSSKGNFPMKRELSSQFWNGTGSSSSSRQFHYDLNYAGNSTTVEEDNSFVSLLSHLPQNTTTFHPNALLGPVGNGVLRQQFQLPSMNWNT* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2690 363 Gene3D NAC domain 28 192 IPR036093 GO:0003677|GO:0006355
Gso11g2690 363 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 3 334 - -
Gso11g2690 363 MobiDBLite consensus disorder prediction 149 167 - -
Gso11g2690 363 MobiDBLite consensus disorder prediction 1 21 - -
Gso11g2690 363 ProSiteProfiles NAC domain profile. 19 187 IPR003441 GO:0003677|GO:0006355
Gso11g2690 363 SUPERFAMILY NAC domain 14 187 IPR036093 GO:0003677|GO:0006355
Gso11g2690 363 MobiDBLite consensus disorder prediction 149 170 - -
Gso11g2690 363 Pfam No apical meristem (NAM) protein 20 147 IPR003441 GO:0003677|GO:0006355
Gso11g2690 363 PANTHER NAC TRANSCRIPTION FACTOR 56 3 334 - -
Gso11g2690 363 MobiDBLite consensus disorder prediction 1 18 - -
Gso11g2690 363 MobiDBLite consensus disorder prediction 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2690 Gso-Chr11 42849386 42851276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2690 1 363 NAC Transcription Factor Family AT1G61110 52.861 1.29e-110 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso11g2690 NAM 3.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2690 - - gmx:100792372 717.227