Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso11g2675 | ATGCAAGATAAGCTTGCCATAATTGATAAAAATCAAACTTGGGAACTCGTTGAAAGACCTGAACACAGAAAAGTCATAGGTGTGAAGTGGATGTTTAGAACAAAGCTGAATGCAGATGGCTCAATCAACAAACACAAAGCATGGTTAGTATTAAAGGGGTATGCTCAAATTTTTGGAGTATATTTCTTTGATACTTTTGCTCCGGTTGCAAGGCAGGATACCATTAGGATATTGCTAGTTATCGCAACACAAAATGGATGGAAAATCTGCCAACTTGATGTCAAGTCAGCTTTCTTAAATGGATTTTTGGAGGAAGAAATCTATGTTGAGCAACATGAAGGTTTCCTTATGAAAGGACATGGGGACAAATTCTATCTATTAAAAAAGGCTTTGTATGGTTTGAAACAAGCCCCAATAGCCCAGTACAACAGGATTGATGAGTACTTATCAAAACTAGGCTTAGTTAAAAGTCTTAATGAATCTAATTTATACATCAAAGTCACTGGCAGTAATGTTGAACTTATTCAACAGTTCAAGGATGATATGATGCAAGTATTTGAGATGACAAACCTAGGAGAAATGTCCTATTTCCTTGGTATGAAGGTTAAGCAGAACAAAGGTGATATTTTCATCTGTCAGAGGAAGTATGCAAAGAAGATCCTGAAGAAATTCAACATGGAGAATTGTAAAGGGATGATGGTTCAGAACACAAGTAGAAGAAGCACTCTACAGAAGTTTAATTGGTTGCTTAATGTATCTCACAACAACAAGACCAAATATCTTGTATGTTGTAAATGTACTTTCAAAATTGATGAATTATGCAAAACAATCCCATTTGAAAGCAGCAAAAAGGGTGCTAAGGCTTTTAGCTTTGGATCAAGGATGTTCTCTTGGTGTTCCAAAAAACAAGAAACTGTTGCACAATCAACCGCTGAAGTAGAATTTATAGCAGCCACAACAGCTGTTAATCAAGCCTTATGGTTAAGGAAAATACTAACTGATTTGCACTTGGAGCAAGATACAACTATTGAAGTAATGGTGGACAATCAAGCAACCATAATCATCTCTAAAAATCCAGTGTTTCATGGAAAAACGAAGTATTTCAACATCAAATTATTCTTCCTTAGAGATGTACAGAGGATTAGTTGTTTTATTTTCTGTTACTTAGTAGCTATGTTAGTGGTTGATTATTATTTAGGAAGTCCGTTATTATTGCTTCCTGTTACAACAGATCTTTGCCATCACATCTTGCAGCTAAAAGCTTTTAATTGTTTAACTCTTATTTACTTTTGCTTGAGGGGCCAAAATTCCTTACTTACCATTTTTTTTAAAAATTTCTTTCCATTTCTATACGTATATTGCCTCATGTTTTTATTCTTTTGCTGTGCAGGCTATCCGCTAGATAATGTAAGGCAATTTTCTGATAAAGAACTGAGATTAGCAACTGATAATTATAATCCAAAGAATAAGATAGGACGAGGAGGTTTTGGAACCGTTTACCAGGGAACCTTAAGAGATGGAAGGCGTATAGCAGTGAAGACTCTCTCAGTTTGGTCAAAGCAGGGAGTTCGCGAATTTTTGACTGAAATTAAAACTTTGTCAAATGTTAAACATTCAAACCTTGTTGAATTGATTGGATTCTGCATTCAAGGACCTAGTCGTACATTAGTCTACGAGCATGTGGAAAATGGAAGCCTTAATAGTGCCCTACTTGGCACAAGGAATAAAAACATGAAACTAGAATGGAGAAAAAGGTCTGCTATTTGTCTAGGTATTGCTAAGGGTCTTGCATTTCTTCATGAAGAACTTTCACCACCTATTGTACACAGAGACATCAAAGCTAGTAATGTACTACTTGACAGAGATTTCAATCCCAAAATAGGTGATTTTGGGCTGGCTAAATTATTTCCAGATGACGTCACTCACATTAGCACAAGAATTGCTGGAACAACAGGTTACTTAGCACCGGAATATGCATTAGGTGGCCAGTTAACCAAGAAGGCTGATATATACAGCTTTGGGGTTCTTATACTTGAAATAATTAGTGGCAGAAGCAGTGCCAGAAGGACAAACGGGGGAGGATCACACAAATTCCTCTTGGAATGGGCCTGGCAACTTTATGAAGAGAGGAAATTGTTGGAGTTTGTAGATCAAGACATGGAAGAATTTCCTGAGGAAGAGGTAATCAGGTACATGAAGGTTGCTCTTTTCTGCACACAGTCAGCAGCAAATAGAAGGCCATTGATGATACAATATTTGCCGCAACCTAGACAGATCCATAGTCCAATATCAACTACTCCCAAAAGCACATGA | 2313 | 0.3684 | MQDKLAIIDKNQTWELVERPEHRKVIGVKWMFRTKLNADGSINKHKAWLVLKGYAQIFGVYFFDTFAPVARQDTIRILLVIATQNGWKICQLDVKSAFLNGFLEEEIYVEQHEGFLMKGHGDKFYLLKKALYGLKQAPIAQYNRIDEYLSKLGLVKSLNESNLYIKVTGSNVELIQQFKDDMMQVFEMTNLGEMSYFLGMKVKQNKGDIFICQRKYAKKILKKFNMENCKGMMVQNTSRRSTLQKFNWLLNVSHNNKTKYLVCCKCTFKIDELCKTIPFESSKKGAKAFSFGSRMFSWCSKKQETVAQSTAEVEFIAATTAVNQALWLRKILTDLHLEQDTTIEVMVDNQATIIISKNPVFHGKTKYFNIKLFFLRDVQRISCFIFCYLVAMLVVDYYLGSPLLLLPVTTDLCHHILQLKAFNCLTLIYFCLRGQNSLLTIFFKNFFPFLYVYCLMFLFFCCAGYPLDNVRQFSDKELRLATDNYNPKNKIGRGGFGTVYQGTLRDGRRIAVKTLSVWSKQGVREFLTEIKTLSNVKHSNLVELIGFCIQGPSRTLVYEHVENGSLNSALLGTRNKNMKLEWRKRSAICLGIAKGLAFLHEELSPPIVHRDIKASNVLLDRDFNPKIGDFGLAKLFPDDVTHISTRIAGTTGYLAPEYALGGQLTKKADIYSFGVLILEIISGRSSARRTNGGGSHKFLLEWAWQLYEERKLLEFVDQDMEEFPEEEVIRYMKVALFCTQSAANRRPLMIQYLPQPRQIHSPISTTPKST* | 771 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso11g2675 | 770 | PANTHER | - | 476 | 751 | - | - | |
Gso11g2675 | 770 | ProSiteProfiles | Protein kinase domain profile. | 485 | 763 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Gso11g2675 | 770 | CDD | STKc_IRAK | 491 | 749 | - | - | |
Gso11g2675 | 770 | SUPERFAMILY | DNA/RNA polymerases | 10 | 372 | IPR043502 | - | |
Gso11g2675 | 770 | Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) | 11 | 233 | IPR013103 | - | |
Gso11g2675 | 770 | ProSitePatterns | Protein kinases ATP-binding region signature. | 491 | 513 | IPR017441 | GO:0005524 | |
Gso11g2675 | 770 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 607 | 619 | IPR008271 | GO:0004672|GO:0006468 | |
Gso11g2675 | 770 | SUPERFAMILY | Protein kinase-like (PK-like) | 468 | 754 | IPR011009 | - | |
Gso11g2675 | 770 | Pfam | Protein kinase domain | 485 | 696 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Gso11g2675 | 770 | Gene3D | Transferase(Phosphotransferase) domain 1 | 561 | 760 | - | - | |
Gso11g2675 | 770 | PANTHER | PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA | 476 | 751 | - | - | |
Gso11g2675 | 770 | SMART | serkin_6 | 485 | 749 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Gso11g2675 | 770 | Gene3D | Phosphorylase Kinase; domain 1 | 463 | 560 | - | - | |
Gso11g2675 | 770 | CDD | RNase_HI_RT_Ty1 | 288 | 377 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso11g2675 | Gso-Chr11 | 42712871 | 42723510 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso11g2675 | 473 | 749 | Receptor kinase-like Gene Family | AT1G56120 | 52.708 | 3.02e-91 | 303 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Gso11g2675 | Pkinase | 2.4e-45 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso11g2675 | - | - | gmx:100814014 | 1560.04 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso15g0621 | 15 | 5511709 | 5515676 | Gso11g2675 | 11 | 42712871 | 42723510 | GST | |
Gso7g1653 | 7 | 38529567 | 38534489 | Gso11g2675 | 11 | 42712871 | 42723510 | PCT | |
Gso11g2675 | 11 | 42712871 | 42723510 | Gso7g1653 | 7 | 38529567 | 38534489 | PCT |