Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2650 ATGGAGAACAACCCTAGTTCATCCAGAGTTGACAGAAAATTCATTGAGAGGAATAGAAGAAATCAAATGAAAGCTCTCTTTCGCAAACTAAACTCACTTGTGCCTCATCAAAGATCAAAGGAGGCCATTCCACTGCCGGATCAGCTAGAAGAAGCCACAAACTACATAAAGAAACTACAGATTAATCTGGAGAAAATGAAGGACAAGAAGAACATGCTACTAGGAAATGAAAGGCCAAATGAGAGAATGAATAATGATGGAAGGAGGGTGGGATTAAAATCTCCACGGATTGAAATCCAACAAATGGGTTCAGCCTTAGAGGTTGTTCTAATAACTGGGTTGGATTCTCAGTTCATGTTCGGTGAAACCATTCGTGTTCTTCATGAAGAAGGAGTAGATGTTGTTAACGCTAGTTATAAAGTTATTGAAGATGCAGTTTTCCATTCAATACACTGTCAGGACAAGGAAGAAACTGCCAACGGAGCTGCGAGGATATCTGAGAGGTTGAAGAACTTCATCCATGATTCTAGCTACAATGCTTTTTAA 546 0.3956 MENNPSSSRVDRKFIERNRRNQMKALFRKLNSLVPHQRSKEAIPLPDQLEEATNYIKKLQINLEKMKDKKNMLLGNERPNERMNNDGRRVGLKSPRIEIQQMGSALEVVLITGLDSQFMFGETIRVLHEEGVDVVNASYKVIEDAVFHSIHCQDKEETANGAARISERLKNFIHDSSYNAF* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2650 181 Pfam Helix-loop-helix DNA-binding domain 9 60 IPR011598 GO:0046983
Gso11g2650 181 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 174 IPR015660 GO:0003700|GO:0006357
Gso11g2650 181 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Gso11g2650 181 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 76 IPR036638 GO:0046983
Gso11g2650 181 Gene3D - 1 87 IPR036638 GO:0046983
Gso11g2650 181 PANTHER TRANSCRIPTION FACTOR BHLH162 1 174 - -
Gso11g2650 181 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2650 Gso-Chr11 42453990 42455643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2650 3 173 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 43.646 2.39e-47 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g2650 HLH 7.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2650 - - gmx:100784418 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0646 15 5752269 5753871 Gso11g2650 11 42453990 42455643 GST
Gso7g1674 7 38745390 38750087 Gso11g2650 11 42453990 42455643 PCT
Gso11g2650 11 42453990 42455643 Gso7g1674 7 38745390 38750087 PCT