Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2646 ATGGCCACGCCTCCTATTGATCGCTGGGACGCTGATAAAATACTTCGATTATATTTGCATGATTATATGATCAAAAGGGGAATGCACAACGCTGCTGAGATTTTCAAGAAGGAAGCACAAGTTCCCGATCACCCTGTTTATGGATTTCTGCTTGAATGGTGGTCTATTTTCTATGAGGTATTTAACTCTAGGCAAGGGAAGGACCTAGAGACTGGGCCAGGGTCCTCTAGTAAGGTCCCAATGATGACACATAATGCAAGGAATAATGCTCCCCCGAGAATCCCTCAAATATCAATGAGTGAGCAGAGAACTCCACAATTTCAAGTCAACTCCAGCTTTAACAACATGATGGCTCAACCAGCCGTTTGTGTAATACCTTCAACAATGTACAATAAAGAAGAGCATCTTGGATATCTGCCCGAAAATGTTGAACCAAGTTTGCATGATGTTATAAAAAATAACCTGACGTTCTTGTCAGGGATTAGTTCAAATTATCCACCGCAAGATGTACTAAGCAAGCAGGCCCAGAAGCAAGTCTTTAAGGATAGTAGAGTTGGCATGAGTGTGGAGAGGGATATACCTAGGGACCCACTGGATGTAATGCAAAAAACAATGCTTCCTTTAGATGGACTTCATGAAACAAAAACCAATGAAGCTCTCAATATAGTGCCACTAAATGGATGGCCAATAAATAACCAAGTACTAACTTCACCTTTGCAAACACCAAATTGTCGACAGAAGTGTCAAATGTTGAAAACACAAAATCAGGATGCAATCCTTGCTCAAGCAATTGCAGGTACTTCTAAAAATCAGACTTCCACAGTTCCTGAAAACTCTAGCAAATGCAACACTACGAAGATTTCTGAGACTGAATCAAGTGATAAGGATAAGCAGATGATAAACCAAATGATTACAACTGTAGAGCATCAACACCAGCAGGATCAACAAATGCAGATGCAGTTCCAGAATGTTGAGAATAACAGAAAAAGAAAGACAACAGAATCCATAAGACCTGGAGAAAGTGCCCGGAACTGTGAGGATACAGCCAATGGAAAACCTTTGGATGAAAATGTGGAGTCTTTCCTGTCTTTAGAAAATGAACACGCTGATCATAAAATTGCACCCTTCAGAAATCTGAAACGAACTTCAGCCACATGCAGAAATGAAAAAAAAGGTTTTTCATTCAATGAGGTTGGTTGCCTTCATTCAAGCAAAAGCAAGGTTTTGTCTAGCCATTTTTCATCGGATGGAAAAGTTTTGGCAAGTGCTGGACATGAGAAGAAGGTTTTCATTTGGAACATGGAAAATTTTGATTGTGTAACTACTACAGAAACACATTCACTTCTTGTTACAGATGTTCGGTTTAGACCAGGTTCAACTATCTTTGCAACTTCGTCCTTTGATAGATCTGTGAGACTATGGGATGCAGCCAGACCAACCAGTTCTCTGCTCAAACTTACTGGGCATGCCGAACAAGTAATGTCATTGGACTTCCACCCAAGAAAAGTGGACCTTCTTTGCTCATGTGATAGTAATGATGTAATTCGAATGTGGAATATCAATCAAGGTGTTTGCATGCATATCACTAAGGGAGGTAGTAAACAGGTCAGATTCCAGCCTAGTTTTGGGAAGTTTTTGGCTACTGCTACAGAAAATAATATCAAAATATTTGATGTGGAGACCGACAGTCTTCTGTACAATCTAGAGGGACATGTTAATGATGTTCTCTCCATTTGTTGGGATAAAAATGGAAACTATGTTGCCTCCGTCAGTGAAGATACTGCACGTATCTGGTCATCAGACGGAAAATGCATAAGTGAATTGCATTCAACCGGAAACAAGTTCCAATCATGCGTATTTCATCCAGAATATCATAACCTCTTAGTTATTGGTGGCTATCAGTCCCTGGAATTGTGGAGTCCCTCTGAGAGCAGTAAAACATGGGCTGTTCCAGCTCACAAGGGATTAATTGCTGGACTAGCAGATTCTTCCGAAAATGAAATGGTTGCCTCAGCTAGCCATGATCATTGCGTGAAACTATGGAAATGA 2049 0.4046 MATPPIDRWDADKILRLYLHDYMIKRGMHNAAEIFKKEAQVPDHPVYGFLLEWWSIFYEVFNSRQGKDLETGPGSSSKVPMMTHNARNNAPPRIPQISMSEQRTPQFQVNSSFNNMMAQPAVCVIPSTMYNKEEHLGYLPENVEPSLHDVIKNNLTFLSGISSNYPPQDVLSKQAQKQVFKDSRVGMSVERDIPRDPLDVMQKTMLPLDGLHETKTNEALNIVPLNGWPINNQVLTSPLQTPNCRQKCQMLKTQNQDAILAQAIAGTSKNQTSTVPENSSKCNTTKISETESSDKDKQMINQMITTVEHQHQQDQQMQMQFQNVENNRKRKTTESIRPGESARNCEDTANGKPLDENVESFLSLENEHADHKIAPFRNLKRTSATCRNEKKGFSFNEVGCLHSSKSKVLSSHFSSDGKVLASAGHEKKVFIWNMENFDCVTTTETHSLLVTDVRFRPGSTIFATSSFDRSVRLWDAARPTSSLLKLTGHAEQVMSLDFHPRKVDLLCSCDSNDVIRMWNINQGVCMHITKGGSKQVRFQPSFGKFLATATENNIKIFDVETDSLLYNLEGHVNDVLSICWDKNGNYVASVSEDTARIWSSDGKCISELHSTGNKFQSCVFHPEYHNLLVIGGYQSLELWSPSESSKTWAVPAHKGLIAGLADSSENEMVASASHDHCVKLWK* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2646 682 MobiDBLite consensus disorder prediction 324 354 - -
Gso11g2646 682 ProSiteProfiles Trp-Asp (WD) repeats profile. 650 682 IPR001680 GO:0005515
Gso11g2646 682 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 682 IPR044716 GO:0003714
Gso11g2646 682 ProSitePatterns Trp-Asp (WD) repeats signature. 506 520 IPR019775 -
Gso11g2646 682 ProSiteProfiles LIS1 homology (LisH) motif profile. 11 43 IPR006594 GO:0005515
Gso11g2646 682 ProSiteProfiles Trp-Asp (WD) repeats profile. 401 442 IPR001680 GO:0005515
Gso11g2646 682 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 443 475 - -
Gso11g2646 682 MobiDBLite consensus disorder prediction 269 287 - -
Gso11g2646 682 Pfam WD domain, G-beta repeat 650 682 IPR001680 GO:0005515
Gso11g2646 682 Pfam WD domain, G-beta repeat 564 599 IPR001680 GO:0005515
Gso11g2646 682 Pfam WD domain, G-beta repeat 483 519 IPR001680 GO:0005515
Gso11g2646 682 Pfam WD domain, G-beta repeat 438 475 IPR001680 GO:0005515
Gso11g2646 682 MobiDBLite consensus disorder prediction 327 341 - -
Gso11g2646 682 Gene3D - 535 682 IPR015943 GO:0005515
Gso11g2646 682 ProSiteProfiles Trp-Asp (WD) repeats profile. 443 475 IPR001680 GO:0005515
Gso11g2646 682 MobiDBLite consensus disorder prediction 269 294 - -
Gso11g2646 682 ProSiteProfiles Trp-Asp (WD) repeats profile. 486 528 IPR001680 GO:0005515
Gso11g2646 682 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 650 682 - -
Gso11g2646 682 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 486 523 - -
Gso11g2646 682 SUPERFAMILY WD40 repeat-like 394 682 IPR036322 GO:0005515
Gso11g2646 682 SMART WD40_4 436 475 IPR001680 GO:0005515
Gso11g2646 682 SMART WD40_4 394 433 IPR001680 GO:0005515
Gso11g2646 682 SMART WD40_4 522 558 IPR001680 GO:0005515
Gso11g2646 682 SMART WD40_4 601 640 IPR001680 GO:0005515
Gso11g2646 682 SMART WD40_4 641 682 IPR001680 GO:0005515
Gso11g2646 682 SMART WD40_4 561 599 IPR001680 GO:0005515
Gso11g2646 682 SMART WD40_4 479 519 IPR001680 GO:0005515
Gso11g2646 682 Gene3D - 376 534 IPR015943 GO:0005515
Gso11g2646 682 CDD WD40 397 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2646 Gso-Chr11 42409252 42416611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2646 446 639 Miscellaneous Gene Families AT5G08390 25.871 4.25e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gso11g2646 WD40 0.041 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2646 - - gmx:100783354 1314.67