Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2645 ATGAAGTTCAACATTGCGAATCCCACCACCGGTTGTCAGAAGAAGCTGGAGATCGATGATGACCTGAAGCTGCGAGCATTTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGGAACTCCTTGTTTCCGTGGTTACGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTTGGTAATTGTGAAGAAGGGTGAAAATGATTTGCCTGGCCTGACAGATGTTGAAAAGCCAAGAATGAGGGGTCCAAAGAGAGCTTCCAAAATCCGCAAGCTTTTCAACCTGTCTAAGGAGGATGATGTGAGGAAGTATGTCAACACCTATAGGAGAACATTTACAACTAAAAATGGGAAAAAGGTGAGCAAAGCTCCGAAGATACAACGACTGGTCACTCCCCTGACCCTCCAAAGAAAGAGGGCAAGGATTGCAGATAAGAAGAAGAGAATCGCCAAAGCAAAATCGGAGGCAGCAGAGTACCAGAAACTTCTTGCCTCCAGATTGAAGGAGCAGAGAGATCGCCGGAGTGAGAGCTTGGCTAAGAGAAGATCCAAGCTTTCCAGTGCAACTAAACAAGCAGCCACAGCATAA 750 0.4747 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVVGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKRRSKLSSATKQAATA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2645 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 248 - -
Gso11g2645 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Gso11g2645 249 MobiDBLite consensus disorder prediction 218 237 - -
Gso11g2645 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Gso11g2645 249 Gene3D - 133 234 - -
Gso11g2645 249 Coils Coil 189 216 - -
Gso11g2645 249 MobiDBLite consensus disorder prediction 218 249 - -
Gso11g2645 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Gso11g2645 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
Gso11g2645 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 248 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2645 Gso-Chr11 42405596 42408024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2645 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 71.486 3.32e-119 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2645 K02991 - gmx:100801194 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0652 15 5805349 5807830 Gso11g2645 11 42405596 42408024 GST
Gso7g1683 7 38883259 38885935 Gso11g2645 11 42405596 42408024 PCT
Gso11g2645 11 42405596 42408024 Gso7g1683 7 38883259 38885935 PCT