Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2640 ATGGACGGAAGTTGGAGTGAGGGAAAAAGGAGCATGAGTTACAAGGAGGAGGATGAGTACGAAGAAGAGGAAGAGGAGGAGGTGAGTGAGTATGGAGATGATGGTAAGAAAAAGAGGGTGGTGAGTAATAAGAGAGGGTCCAAAGCTGGAGGCTCAGTGCCACCTTCATGTCAAGTTGATGGTTGCAACGCTGATCTAAGTGAAGCTAAGCCCTACCATAGGCGTCACAAGGTTTGTGAGTACCATGCCAAGGCTCCTGCTGTAGTCATTGGAGATCAGCACCAACGGTTTTGCCAACAATGTAGTAGGTTTCATGAGCTATCAGAATTCGATGACTCAAAAAGGAGTTGCAGAAGACGTTTGGCTGGACATAATGAGAGGCGTCGCAAAAATGCATCTGAGTATCACGGACTTTGA 417 0.47 MDGSWSEGKRSMSYKEEDEYEEEEEEEVSEYGDDGKKKRVVSNKRGSKAGGSVPPSCQVDGCNADLSEAKPYHRRHKVCEYHAKAPAVVIGDQHQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNASEYHGL* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2640 138 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 12 132 - -
Gso11g2640 138 SUPERFAMILY SBT domain 55 135 IPR036893 GO:0003677|GO:0005634
Gso11g2640 138 MobiDBLite consensus disorder prediction 1 59 - -
Gso11g2640 138 PIRSF SBP 2 138 IPR017238 GO:0003677|GO:0003700|GO:0009908
Gso11g2640 138 ProSiteProfiles Zinc finger SBP-type profile. 54 131 IPR004333 GO:0003677
Gso11g2640 138 Pfam SBP domain 57 130 IPR004333 GO:0003677
Gso11g2640 138 Gene3D - 47 118 IPR036893 GO:0003677|GO:0005634
Gso11g2640 138 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 12 132 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2640 Gso-Chr11 42362193 42364209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2640 57 134 SBP-box Gene Family AT2G33810 73.077 2.72e-40 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso11g2640 SBP 1.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2640 - - gmx:100782285 272.322