Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2633 ATGGCGTCTTCTTCAGCCTCTCGTGAGGGACACTACAGAGGAGTTAGGAAGCGACCATGGGGACGCTACGCTGCAGAAATAAGAGATCCGTGGAAGAAGACACGTGTCTGGCTGGGCACATTCGATACTCCCGAGGAAGCCGCCCTCGCCTACGACGGCGCCGCCCGCTCCCTCCGCGGCGCCAAGGCCAAGACCAACTTCCCTCCGGCGCCGCCTCTCTGCCTCGACCTCAACGTCCCTTCCTCCGATCACCGCTGGCCCCACGTCCCCCCTCGCAGCCTCGTCCTCAGCGAGTTCCTCCACACCGCCGTTCTCAGAGACATTGAACCGCCGCAACTACCTTTTCCACCCGCCGCCGCCATCGTCGCTCACCGAAGCCCCCACGCCGGGGGAGTTCAGGTGGTGGAGAGTTCTCCAACGGCGTCGTTTTTGGGTCTCGTTAGGCGCGGCATCCCCATCGACTTGAACGAACCCCCACCCTTGTGGCTATGA 492 0.6341 MASSSASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPPLCLDLNVPSSDHRWPHVPPRSLVLSEFLHTAVLRDIEPPQLPFPPAAAIVAHRSPHAGGVQVVESSPTASFLGLVRRGIPIDLNEPPPLWL* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2633 163 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Gso11g2633 163 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 152 - -
Gso11g2633 163 SUPERFAMILY DNA-binding domain 11 68 IPR016177 GO:0003677
Gso11g2633 163 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12-LIKE 6 152 - -
Gso11g2633 163 SMART rav1_2 11 74 IPR001471 GO:0003700|GO:0006355
Gso11g2633 163 Gene3D AP2/ERF domain 11 69 IPR036955 GO:0003700|GO:0006355
Gso11g2633 163 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700|GO:0006355
Gso11g2633 163 PRINTS Ethylene responsive element binding protein signature 34 50 IPR001471 GO:0003700|GO:0006355
Gso11g2633 163 ProSiteProfiles AP2/ERF domain profile. 11 68 IPR001471 GO:0003700|GO:0006355
Gso11g2633 163 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2633 Gso-Chr11 42299074 42300094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2633 1 163 AP2-EREBP Transcription Factor Family AT1G28360 51.471 7.02e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g2633 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2633 - - gmx:100798369 342.813