Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2632 ATGGCGCCGAGGGATCATAAGACAAGCAACGCTAAGGCTAACGGTAACGGTAACAGCGGGGTGAAGGAGGTGCATTTTCGTGGAGTGAGAAAGAGGCCGTGGGGGAGATACGCCGCGGAGATCAGAGATCCCGGCAAGAAGAGCCGCGTCTGGCTCGGAACCTTCGACACGGCGGAGGAGGCAGCGCGTGCCTACGACGCCGCAGCACGAGAGTTTCGCGGCCCTAAGGCCAAGACAAACTTCCCTCTCCCTTTGGAAAATGTTAAGAACTCGAGCCCCAGCCAGAGCAGCACCGTCGAGTCCTCCAGCCGCGACCGCGACGTCGCCGCCGATTCCTCGCCTCTAGACCTCAACCTCGCCCCCGCCGCCGTCGCATCCGCTCGATTCCCCTTCCAGCACCAGTTCCCGGTTTTTACCGGCGCGGTGCCTGCGGCAAATCAGGTTTTGTACTTCGACGCTGTCCTACGCGCCGGCATGGCCGGTCCACGTGGCTTTGCGTTTGGCTACAATCATCATCCCGTTGCGGCGAGTGAGTTCCACGCGACGACGAGCGACTCGGACTCTTCCTCTGTTATCGATCTGAACCATAATGAAGGCGAGGTTAAGGGGAACGGTTCTAGAATCTTCGATCTGGACCTTAACCATCCTCCTCCGCATGAGATCGCTTGA 669 0.5964 MAPRDHKTSNAKANGNGNSGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPLPLENVKNSSPSQSSTVESSSRDRDVAADSSPLDLNLAPAAVASARFPFQHQFPVFTGAVPAANQVLYFDAVLRAGMAGPRGFAFGYNHHPVAASEFHATTSDSDSSSVIDLNHNEGEVKGNGSRIFDLDLNHPPPHEIA* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2632 222 MobiDBLite consensus disorder prediction 78 110 - -
Gso11g2632 222 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Gso11g2632 222 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Gso11g2632 222 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Gso11g2632 222 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 202 - -
Gso11g2632 222 MobiDBLite consensus disorder prediction 1 27 - -
Gso11g2632 222 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Gso11g2632 222 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Gso11g2632 222 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Gso11g2632 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 1 202 - -
Gso11g2632 222 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Gso11g2632 222 MobiDBLite consensus disorder prediction 84 103 - -
Gso11g2632 222 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2632 Gso-Chr11 42275715 42276877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2632 1 137 AP2-EREBP Transcription Factor Family AT5G44210 50.617 4.73e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g2632 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2632 K09286 - gmx:100170742 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0661 15 5933616 5934726 Gso11g2632 11 42275715 42276877 GST