Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2622 ATGGAGGCCGAGGCAGAGAACAACGACGTGAAGAAGGAAGAAAACAGCAATGATAACAACAACAACAACAACAACAATGAAAGTAACAGCAAAATTGGGAATTCGAGTGAGGGTCTGAGCAAGCCCAAGCGTCAGATGAAGACGCCGTTTCAGCTTGAAACGCTCGAGAAAGCTTATGCTGTTGAGAATTACCCGTCGGAGACTATGAGGGTGGAGTTGTCGGAGAAGTTGGGGTTGTCGGATCGGCAGTTGCAGATGTGGTTCTGTCACCGGCGGTTGAAGGACAAGAAGGAGTTGCCGTCAAAGAAGCCGCGAAAGGCAGCGGCGTTGCCGGATTCTCCGGTGGAGGAGCCCAAGTTGGGGCCTGAAGTGGGTGTTGAATATGGATCCGGGTCAGGTTCGGGGTCCAGCCCGTTTGCCCGGTCGGAGTTGAGGAATGTGGTGCCTCGGGGGTACTATGAGTCACCACAGACTATAATGGAGCTTAGAGCAATTGCTTGTGTGGAGGCTCAGTTGGGGGAGCCTTTGAGGGAAGATGGACCTATTCTTGGAGTGGAGTTTGATCCGTTGCCGCCGGATGCATTTGGGGCACCCTTAGCTGTTACGGAACAGCAGAAGCGGCCAAGTCTTGCCTATGACAGTAAAATATATGAAAGACACGATGCTAGGGCAAATAAGGCTATAGCAAGGACATTCCATGAATACCCTTTTCTTCCAAACCAGTCTGGCATTAGATCCGATGTTTATGGACAACTGAACCTACCTCATTTACATGATCCAATGGATGGTCCTACCAGAACTCCTTTTCCCCTTGGAAATGAACAGCAACCCAGAGTTCATGCTCCCCAAAGTCATTCTTCTCATGTTCGCCTTTTGTCTCAACAGCAGGACAAGCTAGTGATTACCTATCCATCTCCTCCTCGAGACAATGATGTTGCACCCAAAAGGGAACCTCACACAAACATAACCAGCACTGGAATGAACTCCCATCTTACTGATCACCCAATTGTTGGACAAGACAATCCTTATGCTTTAGCTGGTGGGCAAGTTTCCCATAACGATGCAGTATTGAGGATGGAGAGGAAACGAAAGAGTGATGAAACCAAAGTTGCAAAGGAAGTTGAAGCCTATGAAATGAGGATGCGAAAAGAGCTTGAGAAACAAGATAACCTCAGACGAAAGAGTGAAGAGCGAATGAGGAAAGAAATGGAAAGACAAGATCGTGAAAGAAGGAAGGAAGAAGAGAGGTTGATGCGTGAGAAACAACGAGAAGAGGAAAGATCAAGGCGTGAGCAAAGACGGGAAATGGAACGAAGGGAAAAGTTTTTGTTGAAAGAACATTTAAGAGCTGAGAAAAGGAGGCAAAAAGAAGAGATCCGCAAAGAGAAGGAGGAAGAGAGGAGGAAAGCTGCCCTTGAGAAGGCAAATGCTCGGAGAATAGCTAAAGAATCTATGGAGCTTATCGAGGATGAACAACTGGAATTGATGGAGTTGGCTGCTGCAAGCAAGGGGCTTTCATCTATTATTCATATTGATCTTGATACTTTGCAAAACCTTGAATCATTTAGGGATTCGTTGTGTATATTTCCACCCAAGAGTGTAAAGCTGAGAAAACCATTTGCTATCCAGCCCTGGATTGACTCAGAACAGAATATCGGCAACCTTCTCATGGTTTGGAGATTCTTGATTACTTTTGCTGATGTACTTGATTTATGGCCTTTTACTCTTGACGAGTTTGTACAGGCATTTCACGACTATGATTCTAGATTGTTGGGTGAGATTCATGTTGTTCTTCTCAAAGTGATAATAAAAGACATTGAAGATGTTGCAAGGACGCCTTCTACAGGATTAGGGATGAACCAGAATGGTGCTGCTAATCCTGGAGGTGGCCATCCAGAGATTGTGGAAGGAGCATATGCATGGGGCTTTGACATACGAAATTGGCAGAAGAACTTAAATCAATTGACATGGCCAGAAGTTTTCCGACAGTTAGCATTGTCTGCGGGATTAGGACCACAGCTGAAGAAAAGAAATATTACATGGTCATATGCAATTGATAAAGACGAGGGAAAAAGTTGCAAAGATATAATTTCTACACTTCGTAATGGTTCAGCAGCTGAAAGTGCTGTGGCCAAAATGCAAGAGAGAGGTCTGTTAGCTCCTCGAAGATCAAGGCACCGGCTAACTCCTGGAACAGTTAAATTTGCAGCTTTTCATGTTCTCTCGCTGGAGGGTAGTAAGGGTTTGACAGTACTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACGACCAGCAAAACACCTGAAGCATCAATTTCTGTTGCTTTGACAAGAGACACTAAATTGTTTGAAAGAATTGCTCCATCAACATATTGTGTACGAGATGCATTCAGAAAGAATCCTGCTGATGCTGACTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGCTGATGATGTTGAAAGAGAAGAGGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGATGATGATTTAGTAAATCCTTCAAGTGCAAACCAAAATTCTGAACAGTATGAGGACACAAACATTTGCTCATCAAATGGAAAAGAAAATTTGGGTCACAATGTAGATCTTATTCAAAAAGAGTTTGATACAGATCTACCTTGTTTTCCTAAGAATGGTTCGAAGGATGCTGATTGTCCAATTTCTGTCACCAGACAGCCTGTTGCTTGTGAAGATTTAAATGCTAGCAATCTTGATCAAGATAATATGGAAATTGATGAAAGCAAATCTGGAGAGTCCTGGATTCTAGGGCTTACCGAAGGAGAATATTCTGATCTTAGTGTAGAGGAGCGTCTAAACGCTCTTGTTGCATTGGTTGGTGTGGCAAATGAAGGAAATTCGATCCGTGTTGTTCTTGAGGATCGACTGGAATCAGCAAATGCTCTGAAGAAACAAATGTGGGCTGAAGCACAGATAGATAAAGTTCGTCTGAAAGATGATAATATTAGTAAATTAGATTTTCCATCACTTACTGGGAATAAAGTTGAAACACCATACACTTATCCAGCTATGGAGGGCAACCTAAGCCCAATGCTTGACATTAATATTAACAATATTAATAATGAAGCATCACCCAGCACTGCAGAAAACCAAAAAGGAGATCCTGTAGCACAGAGCATGCCTATGGAGAAGTGCTCATCAATTCAAGATTTTGGCTCAGGTACTGGTGCAGATATCTCTCAGACTCAGGTATCTGCACAATATTCGAAAAGATCACGTTCACAGTTGAAATCTTATATTGCCCACATAGCAGAGGAGATGTATGTCTACAGGTCTTTACCCCTTGGACAAGATCGCAGACGTAACCGATATTGGCAGTTTGTTGCTTCTGCTTCTAGCAATGATCCTGGTTCAGGCAGGATCTTTGTTGAATATCATGATGGCAAGTGGAGGCTTATTGATTCTGAAGAGGCCTTTGATGCTCTTTTGACATCATTGGATTCACGTGGGATCAGGGAATCTCATTTGCGCTTAATGTTGCTAAAGATTGAGAATTCCTTTAAAGAAAATGTTCGAAAGAGGAATGCATGTTGTGCCAAAAATGGAAGCAGGGGCGAATTTTCTATTAAAATTGAAGCTAATGAAGCATGTTCTATCCCTGAGCACAATGCTGGATCTGGCAGTCCTAGCAGTACCCTTCATGACTTGAATGCTGATCCATCTGAAACTTCATCATCCTTCAAAATTGAGCTTGGGAAAACTGAGAGTGAGAAGAAAGCTGCATTGAGAAGGTATCAAGATTTTCAGAAGTGGTTGTGGAAAGAATGTTATAATTCATCGGTTTTATGTGCAATGAAATATGGGATAAAGAGATGCAAACCTCAGATGGACATTTGTGATATATGTCTCAATCTTTATTTTGTTGAAGACTCTCATTGCAATTCCTGCCACCAGACTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTCGAGACAAGTTATCCAAAGATAATTGTATTTTGGAATATTCTCTTCCCTTGCGGACAAGATTGCTTAAGGTCCTGTTGGCCTGTATGGAGGTATCTGTTCTTTCTGAAGCATTTGAAACAAATTGGATCAATGATGTTAGGAAGCACTGGGGCATAAAGTTGAGCAAATCATCTTCTGTTGAGGAACTTTTACAGATATTGACCCTTTTTGAGAGATCACTACGGCGAGATTTTCTGTCGTTGAACTTCTCTACAACAGATGAATTGTTGGGATCAAGCAGTATGTCAGAACGTTCTGTGCAGGCTTCAACTGATCCTGAATCTGTTGCTGTGCTTCCATGGGTTCCACTAACGACTGCAGCTTTGTCTCTCAGGCTTTTTGAGATTGATTCATCCATCAGCTATGTAAAGCTTGAAAGACTTGAGCCTTGTGAGGAGAAAGAAGCAAGAGAATACATAAAGCTTCCATCAAGATATACTCACATGAAATCTAATAGGGAGGTTGAACCAGCCGAATTTGTCCATGATGAATTCACTAAAGATAAATCTGTTCCTAAGAAAATTGTACGAAATGGCAACAAACGTGGTCGAGGGACTAATGAACAAGGACGGGGTAAAAAGCTGGCTAAAAGAGTGTGCAATTCTAAACGAGATGGTGGTCGTAAGAATGCTAAGGTCACTGACAATCTAAGTCACAGATTAAAACAGCAGGCTCGAGGAACACAAGGACAAGGTGCTGGGCGAGGTCGCCGAACCATAAGGAAGCGGAGAATGGGAAAGAGAGCTGTTGAAGATTTGTTGCTTGGCCATACGACAGCCAGTCATAGCTACAAGATTGATAGAGAACCGGTGAGAAACTTGGATGAGGAATGGGATGGAGAAAAGGCGAGTCCCATGACTCCGGTACACATTGGGGTGGCTGCTGACAATAGTAACAGTGCTGAAGAGGTGGAGTCTGATGACGACAATGCTCAAGCTGTGGAATATGATCAAGGAAACTGGGAGGTAGGTTTTAATGGTGTTCCCCCCAACAGATGGAGTAGGGGTTTGGTTGGAATGAGTGATGAAGATGTGGATGCTTTTGAAGAACTTAATGACAATGGCATTGAGGAGAATGAAGAGGAAGATTCAGAAGCAGATGTTATGAGTGAGGGTTCAGATGGGATCCCAAATACGGTAGTAAATGTTGGAGGCTCAGACTCGGCTTTGTCCGAAGATTCTTCTGATTAG 5268 0.4275 MEAEAENNDVKKEENSNDNNNNNNNNESNSKIGNSSEGLSKPKRQMKTPFQLETLEKAYAVENYPSETMRVELSEKLGLSDRQLQMWFCHRRLKDKKELPSKKPRKAAALPDSPVEEPKLGPEVGVEYGSGSGSGSSPFARSELRNVVPRGYYESPQTIMELRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPLAVTEQQKRPSLAYDSKIYERHDARANKAIARTFHEYPFLPNQSGIRSDVYGQLNLPHLHDPMDGPTRTPFPLGNEQQPRVHAPQSHSSHVRLLSQQQDKLVITYPSPPRDNDVAPKREPHTNITSTGMNSHLTDHPIVGQDNPYALAGGQVSHNDAVLRMERKRKSDETKVAKEVEAYEMRMRKELEKQDNLRRKSEERMRKEMERQDRERRKEEERLMREKQREEERSRREQRREMERREKFLLKEHLRAEKRRQKEEIRKEKEEERRKAALEKANARRIAKESMELIEDEQLELMELAAASKGLSSIIHIDLDTLQNLESFRDSLCIFPPKSVKLRKPFAIQPWIDSEQNIGNLLMVWRFLITFADVLDLWPFTLDEFVQAFHDYDSRLLGEIHVVLLKVIIKDIEDVARTPSTGLGMNQNGAANPGGGHPEIVEGAYAWGFDIRNWQKNLNQLTWPEVFRQLALSAGLGPQLKKRNITWSYAIDKDEGKSCKDIISTLRNGSAAESAVAKMQERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYCVRDAFRKNPADADSILSEARKKIQIFENGFLAGEDADDVEREEESESDEVDEDPEDDDLVNPSSANQNSEQYEDTNICSSNGKENLGHNVDLIQKEFDTDLPCFPKNGSKDADCPISVTRQPVACEDLNASNLDQDNMEIDESKSGESWILGLTEGEYSDLSVEERLNALVALVGVANEGNSIRVVLEDRLESANALKKQMWAEAQIDKVRLKDDNISKLDFPSLTGNKVETPYTYPAMEGNLSPMLDININNINNEASPSTAENQKGDPVAQSMPMEKCSSIQDFGSGTGADISQTQVSAQYSKRSRSQLKSYIAHIAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEYHDGKWRLIDSEEAFDALLTSLDSRGIRESHLRLMLLKIENSFKENVRKRNACCAKNGSRGEFSIKIEANEACSIPEHNAGSGSPSSTLHDLNADPSETSSSFKIELGKTESEKKAALRRYQDFQKWLWKECYNSSVLCAMKYGIKRCKPQMDICDICLNLYFVEDSHCNSCHQTFPSNNGFNFSKHAFQCRDKLSKDNCILEYSLPLRTRLLKVLLACMEVSVLSEAFETNWINDVRKHWGIKLSKSSSVEELLQILTLFERSLRRDFLSLNFSTTDELLGSSSMSERSVQASTDPESVAVLPWVPLTTAALSLRLFEIDSSISYVKLERLEPCEEKEAREYIKLPSRYTHMKSNREVEPAEFVHDEFTKDKSVPKKIVRNGNKRGRGTNEQGRGKKLAKRVCNSKRDGGRKNAKVTDNLSHRLKQQARGTQGQGAGRGRRTIRKRRMGKRAVEDLLLGHTTASHSYKIDREPVRNLDEEWDGEKASPMTPVHIGVAADNSNSAEEVESDDDNAQAVEYDQGNWEVGFNGVPPNRWSRGLVGMSDEDVDAFEELNDNGIEENEEEDSEADVMSEGSDGIPNTVVNVGGSDSALSEDSSD* 1756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2622 1755 Coils Coil 374 480 - -
Gso11g2622 1755 MobiDBLite consensus disorder prediction 1234 1255 - -
Gso11g2622 1755 MobiDBLite consensus disorder prediction 1714 1728 - -
Gso11g2622 1755 CDD homeodomain 43 98 IPR001356 GO:0003677
Gso11g2622 1755 MobiDBLite consensus disorder prediction 1734 1755 - -
Gso11g2622 1755 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 4 1755 IPR044977 GO:0006357
Gso11g2622 1755 SUPERFAMILY Homeodomain-like 32 97 IPR009057 -
Gso11g2622 1755 Pfam Homeodomain 41 97 IPR001356 GO:0003677
Gso11g2622 1755 MobiDBLite consensus disorder prediction 1 51 - -
Gso11g2622 1755 Pfam DDT domain 551 605 IPR018501 -
Gso11g2622 1755 MobiDBLite consensus disorder prediction 1535 1603 - -
Gso11g2622 1755 Coils Coil 3 23 - -
Gso11g2622 1755 MobiDBLite consensus disorder prediction 829 879 - -
Gso11g2622 1755 ProSiteProfiles HARE-type HTH domain profile. 731 800 IPR007759 GO:0006355
Gso11g2622 1755 MobiDBLite consensus disorder prediction 386 435 - -
Gso11g2622 1755 MobiDBLite consensus disorder prediction 17 42 - -
Gso11g2622 1755 MobiDBLite consensus disorder prediction 98 112 - -
Gso11g2622 1755 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1122 1194 IPR028941 -
Gso11g2622 1755 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Gso11g2622 1755 Pfam HB1, ASXL, restriction endonuclease HTH domain 731 799 IPR007759 GO:0006355
Gso11g2622 1755 MobiDBLite consensus disorder prediction 1714 1755 - -
Gso11g2622 1755 MobiDBLite consensus disorder prediction 1 16 - -
Gso11g2622 1755 Gene3D - 40 98 - -
Gso11g2622 1755 ProSiteProfiles DDT domain profile. 549 608 IPR018501 -
Gso11g2622 1755 PANTHER HOMEOBOX DOMAIN PROTEIN 4 1755 - -
Gso11g2622 1755 MobiDBLite consensus disorder prediction 98 124 - -
Gso11g2622 1755 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 941 984 IPR028942 -
Gso11g2622 1755 MobiDBLite consensus disorder prediction 1543 1575 - -
Gso11g2622 1755 SMART HOX_1 40 102 IPR001356 GO:0003677
Gso11g2622 1755 MobiDBLite consensus disorder prediction 832 855 - -
Gso11g2622 1755 MobiDBLite consensus disorder prediction 856 879 - -
Gso11g2622 1755 SMART testlast3 549 608 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2622 Gso-Chr11 42190678 42201076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2622 34 1685 Homeobox Transcription Factor Family AT1G28420 48.580 0.0 1318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso11g2622 WSD 9.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2622 - - gmx:100777465 3181.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1708 7 39147223 39157472 Gso11g2622 11 42190678 42201076 PCT
Gso11g2622 11 42190678 42201076 Gso7g1708 7 39147223 39157472 PCT