Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2617 ATGAACCATGTTGAGCATATCGCTTATGACATGGTCATGATCACTCTTTCCATGTCTCTCATCGTCCTCGCCATCATCCTCTTCCTTGCTTGCAAGAAGAAGCCCGTTGAATCCGAAGAAACACTCCCCGTGAAGCTTTGTGCTCGTGCACACCCCTTGATGGAAATCGATGCTGCCACCGATGGCTTCAACCCCAGGAGAATCATTGGCCAGGGTCGCTTAGGAACCGTGTATGCAGGGACACTGGACAAAGAAAAAGAACAACTTGTAGCCTTGAAGCGTATTCACCCTTTTCTTGTGTTGAGCAATGCAGGGTTTGGTTTCTCATCCGTGTTGAAGTGGCTCTCCTTGGCTCAACACCCCAACGTGGTTCCAATCATAGGGTTCTCAGAAGCACCCGGTGAGAGAGTTATTGTGATGGAGTTTGTGCACATGGCAAGCTTGGACTTCTACTTGCACCAAAACCAAGATGGGGCTTCACTTTTGGATTGGAACAAGAGGTTCAGGATTGCAGCTGGAGTAGCAAGAGGGCTTCAATACCTGCATGAAGTGGTGGCACCAAACATAGTACATGGGTGTGTCAAGTCCTCTAATATTCTCATTGATGTTAACTTTTGTGCTAGGATTTGTGATTATGGGCTTAACTTTTTGGCACCTGTGGAAAAGAGGGGGATAGTGGGGTATGTGGATGATGAGTATTGGAGTGAAAGAAGGGGTGGTGTAGCTACCAAGGAAAGTGATGTTTATGGGTTAGGGGTGGTTTTGTTGGAGCTTTTAAGTGGGAAAGGGTGTGAGGGAGGGTTGTTGGTGAAGTGGGCTTTGCCTTTGATAAGAGAAACCAGTTTCAGTGAACTTTTGGATCCTAGGTTGGTTATTCCTTCTGACATGAAGCCTTTGGTTAGATTAGCCAAAGTTGTTTCAGCTTGTGTTGGTAATTCACGGAAATGTAGGCCTTCGGTGGCTCAAGTGGCAACCATTTTGAACAACTTAGAAACGGAAGTGTGTCTCTGA 1011 0.4649 MNHVEHIAYDMVMITLSMSLIVLAIILFLACKKKPVESEETLPVKLCARAHPLMEIDAATDGFNPRRIIGQGRLGTVYAGTLDKEKEQLVALKRIHPFLVLSNAGFGFSSVLKWLSLAQHPNVVPIIGFSEAPGERVIVMEFVHMASLDFYLHQNQDGASLLDWNKRFRIAAGVARGLQYLHEVVAPNIVHGCVKSSNILIDVNFCARICDYGLNFLAPVEKRGIVGYVDDEYWSERRGGVATKESDVYGLGVVLLELLSGKGCEGGLLVKWALPLIRETSFSELLDPRLVIPSDMKPLVRLAKVVSACVGNSRKCRPSVAQVATILNNLETEVCL* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2617 336 Gene3D Phosphorylase Kinase; domain 1 29 142 - -
Gso11g2617 336 ProSiteProfiles Protein kinase domain profile. 63 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2617 336 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 1 335 - -
Gso11g2617 336 Gene3D Transferase(Phosphotransferase) domain 1 144 334 - -
Gso11g2617 336 SUPERFAMILY Protein kinase-like (PK-like) 41 327 IPR011009 -
Gso11g2617 336 Pfam Protein tyrosine and serine/threonine kinase 67 325 IPR001245 GO:0004672|GO:0006468
Gso11g2617 336 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2617 Gso-Chr11 42151046 42152790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2617 48 327 Receptor kinase-like Gene Family AT3G59420 38.776 4.81e-51 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso11g2617 PK_Tyr_Ser-Thr 5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2617 - - gmx:100792540 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0671 15 6010188 6012044 Gso11g2617 11 42151046 42152790 GST
Gso7g1712 7 39227201 39228975 Gso11g2617 11 42151046 42152790 PCT
Gso11g2617 11 42151046 42152790 Gso7g1712 7 39227201 39228975 PCT