Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2616 ATGTGCAAGTGCATAGGGAAATTAACAAAAAATAAGATGACATGGTGCAATGACTCTGACGAGAATAGGGTTATTGAATCAATCACGCCAAGAATAACTATTACTCCTAACACTGATGACAAAAAGCTCACCCAAGAAATTAGAACCACAGCATGCCCCTCGTGCGGCCATAACATTGCATTCAAAGATAAGGGTGGAATCCATGACTTGCCGGGGTTACCAGCTGGAGTTAAGTTTGACCCAAATGACCAAGAAATATTAGAACATTTGGAGGCAAAAGTTGCGTCTGATGCATGCAAGCTTCATCCCCTAATTGATGAGTTCATACCAACGCTCGAAGGCGAGAATGGGATCTGTTATACACACCCAGAAAAACTACCAGGAGTTAGCAAAGATGGGCAGATCCGCCATTTCTTTCACAGGCCCTCAAAAGCATACACGACTGGAACAAGGAAAAGAAGAAAGGTTCACACTGATGATGAAGGAATTGAAACAAGATGGCACAAAACGGGAAAAACTAGAGCAGTTTTTGCATCTGGTGGTGCAGTGAAAGGTTTTAAGAAAATACTAGTACTCTACACCAACTATGGAAGGCAAAAGAAGCCTGAGAAAACTTACTGGGTGATGCATCAATACCATCTTGGCAATACTGAAGAAGAGAAAGATGGAGAACTAGTTGTTTCAAAAGTCTTCTACCAAACACAACCTAGACAATGTGTTAATCCCATTATCATAAAGGACCCGTACGAAAAAATGTTGAATGGTGGAAGTGTCCAAGACAGCACAAATACATCAATAACTAAAACTACTGCAACTCTTTTGGATTGCTACAATGCTCCTTACATAGATTATGATCATGCCCATGCGAGTCATAATAGGGAAAGTTCCTCACAACTAATAATTCCCAGCTCGGTTGTTCAGGTTGATGGCTCTTATATTCGCTCAACAATGGATGCAAAGAAAGCAAGATTTGAAAGTAACACTGGGAAGAGCTTCTAG 999 0.4084 MCKCIGKLTKNKMTWCNDSDENRVIESITPRITITPNTDDKKLTQEIRTTACPSCGHNIAFKDKGGIHDLPGLPAGVKFDPNDQEILEHLEAKVASDACKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDDEGIETRWHKTGKTRAVFASGGAVKGFKKILVLYTNYGRQKKPEKTYWVMHQYHLGNTEEEKDGELVVSKVFYQTQPRQCVNPIIIKDPYEKMLNGGSVQDSTNTSITKTTATLLDCYNAPYIDYDHAHASHNRESSSQLIIPSSVVQVDGSYIRSTMDAKKARFESNTGKSF* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2616 332 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 13 311 - -
Gso11g2616 332 Pfam No apical meristem (NAM) protein 74 214 IPR003441 GO:0003677|GO:0006355
Gso11g2616 332 Gene3D NAC domain 82 237 IPR036093 GO:0003677|GO:0006355
Gso11g2616 332 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 13 311 IPR044799 GO:0003700
Gso11g2616 332 ProSiteProfiles NAC domain profile. 73 233 IPR003441 GO:0003677|GO:0006355
Gso11g2616 332 SUPERFAMILY NAC domain 68 233 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2616 Gso-Chr11 42137440 42141832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2616 13 239 NAC Transcription Factor Family AT4G28500 72.609 2.26e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso11g2616 NAM 8.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2616 - - gmx:100791680 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0672 15 6019350 6022672 Gso11g2616 11 42137440 42141832 GST