Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2612 ATGGGGTTGATCGATCTGAACACCACGGAAGATGATGAAGCTGCTCCATTATCTGCTTCTTCTCCAGCTTCATATTCTTCTTCTTCTTCTCACTCGGGGATAAGCACTTCTGCTTCAACCTTGGTTGTTCCTCCTACTCCTCCTTCTGTGTGCTTGGAACTGTGGCACGCGTGTGCGGGCCCTTTGATCTCTCTGCCGAAGAAAGGAAGTGTTGTTGTGTACTTGCCACAGGGACACTTTGAGCATGTTCAGGATTTTCCGGTCACTGCTTATGATATCCCACCCCACGTGTTCTGTCGTGTCCTTGATGTCAAGCTCCATGCAGAGGAAGGGAGCGATGAAGTGTATTGCCAAGTGTTGTTGGTTCCTGAAAGTGAGCAAGTGGAGCAAAGCTTGCGGGAAGGGGAAATTGTTGCTGATGGGGAAGAGGAGGATACTGAAGCTATAGTGAAGTCAACAACTCCCCATATGTTCTGCAAGACTCTCACAGCTTCAGACACCAGCACTCATGGTGGATTCTCGGTGCCCCGGCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGACCTTCACAAGAGCTTGTGGCAAAGGATCTTCATGGCTTGGAATGGAGGTTTCGACATATATATAGGGGCCAACCACGGAGGCATCTGCTCACAACTGGGTGGAGTGCATTTGTGAACAAAAAGAAGCTTGTTTCTGGAGATGCTGTGTTGTTTCTTAGGGGCGACGATGGAGAACTGAGATTAGGGATTCGCAGGGCAGCTCAGTTGAAAAGTGCTGGTTCGTTTGCAGTTCCCTCTGGTCAGCAATTGAATCCTGCAACTCTCAAGGGTGTTGTTAATGCATTATCTACAAGATGTGCATTTAGTGTTTGCTACAATCCAAGGTTCAGCTCTTCAGAATTCATCATACCTGTTCACAAATTCTTAAAGAGCCTTGACTGTTCTTATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGACGCGGCAGAGCGAAGATGCACTGGATTAATTGCTGGAATTAGTGATGTTGATCCAGTTAGATGGCTCGGATCAAAATGGAGATGCCTACTGGTAAGGTGGGATGACATAGAAGCTGCTAGGCGCAATAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCAAATTCCAGTAACTTGATGTCAGCTGGTTTGAAGAGGACCAGGATTGGAATGACTTCAGTGAAGCTGGAATTTCCCACTCCCGATGGGATTGGAGCATCAGACTTTGGGGAATCGTTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACTCCCTTTGATGGTATTAATGCTCAGAGTCCCCGGTTATACGAGTTAGGGAGGTGCTATCCTGGTTCAAACTGTTCAGGGATTCCTCCAACAGGAAATAATATCAGAATGCCGCATCCAGCGTCTGATTTTTCCTGCAATGGCATAGGCTTTAGTGAATCTTTCCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGCCAACCATATGGAAGAGTCTTATCTATTGAGGAGGCTCGAGCAAATGGTTGCTATGGACTATATGATGGCTGTCAGTTGCTTAACACCAGAAATGGATGGTCTGCACAGATGCATGACAATGCTCCATATTTGCATGCATCTGTTACACCTGCACAAGTATCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCAGTTAATCCAGTTTCAAACTGTGATTATAATAAAAACAAACGTGATAAGGAAATGGAGGGTAGAGTCCATTACCAAGGTTTATACACATCTGAAGTGAAAGGTAGAACATTTGCATCTTCCCCATTCGATGATCCTATTTTATCCACGCTAGCTCCCGAAGGTGCTAGTTCTTTGGGTATGTTTGATGTTCATAACCAGTTGGGTAGTTCACGGCCACATGAATCAGTGTCAGCATTGAGAAGCAGTCAAGAGTTGGTTTCCTCATGTAAAAGTAGTTGCAGACTCTTTGGTTTTTCATTGACTGAGGACACACATCTTGCAAAGAAAGAGGCGTCAGCCTCTACCATCACTTTACCATTGAGTTCTGGACCTTCCTTTACTAGACTTGTTGAAGATGAGTTCCATCCCGGCCATTCCCTTCCGAGTAAGGGAGTTGGAAGTAACTGCACCAAGGGTGTATTGCAGTATTGA 2211 0.4568 MGLIDLNTTEDDEAAPLSASSPASYSSSSSHSGISTSASTLVVPPTPPSVCLELWHACAGPLISLPKKGSVVVYLPQGHFEHVQDFPVTAYDIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEQSLREGEIVADGEEEDTEAIVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKSAGSFAVPSGQQLNPATLKGVVNALSTRCAFSVCYNPRFSSSEFIIPVHKFLKSLDCSYSVGMRFRMRFETEDAAERRCTGLIAGISDVDPVRWLGSKWRCLLVRWDDIEAARRNRVSPWEIEPSGSASNSSNLMSAGLKRTRIGMTSVKLEFPTPDGIGASDFGESLRFRKVLQGQEILGVNTPFDGINAQSPRLYELGRCYPGSNCSGIPPTGNNIRMPHPASDFSCNGIGFSESFRFQKVLQGQEILPSQPYGRVLSIEEARANGCYGLYDGCQLLNTRNGWSAQMHDNAPYLHASVTPAQVSSPSSVLMFQQAVNPVSNCDYNKNKRDKEMEGRVHYQGLYTSEVKGRTFASSPFDDPILSTLAPEGASSLGMFDVHNQLGSSRPHESVSALRSSQELVSSCKSSCRLFGFSLTEDTHLAKKEASASTITLPLSSGPSFTRLVEDEFHPGHSLPSKGVGSNCTKGVLQY* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2612 736 SMART B3_2 158 260 IPR003340 GO:0003677
Gso11g2612 736 Pfam Auxin response factor 285 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso11g2612 736 PANTHER AUXIN RESPONSE FACTOR 41 736 - -
Gso11g2612 736 Gene3D - 321 395 - -
Gso11g2612 736 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677
Gso11g2612 736 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 41 736 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso11g2612 736 SUPERFAMILY DNA-binding pseudobarrel domain 151 265 IPR015300 -
Gso11g2612 736 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Gso11g2612 736 MobiDBLite consensus disorder prediction 13 29 - -
Gso11g2612 736 Gene3D - 156 260 IPR015300 -
Gso11g2612 736 CDD B3_DNA 156 258 IPR003340 GO:0003677
Gso11g2612 736 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2612 Gso-Chr11 42091919 42098223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2612 157 515 B3 DNA Binding Superfamily AT2G33860 59.780 3.90e-144 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso11g2612 B3 3.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2612 K14486 - gmx:100789906 1441.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0675 15 6047424 6053328 Gso11g2612 11 42091919 42098223 GST