Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2609 ATGCCCCCAACCTTTTCCCATTTGTGCTATTCCATAGATATATGCCAAGTCCAAAACCACTTGCCAACTTGCCATTCCTTCAAAAACCAAAGCCAGACCGACCCTAAGAAGAAACCAACAAACATGGGAAGCAAGAAAACCTACGAGGAAGAAGAAAGCACGGCTCTATTTTCCCATTCCCAAACACAAACAGACTTGCTGTTACCCTTCAACGAGAACGACCCACAGGACATGGTCATATACCAAGTCCTCCACGAAGCCAATGCTCTCACCAACACATTCCTCCCTCAGCCCACCAGAAACATAACAAAGAAGCACTACAGAGGAGTCCGCCGCCGTCCTTGGGGAAAATACGCCGCTGAGATTCGCGACTCGGCGCGCCACGGCGCCAGGATATGGCTCGGCACCTTCCAAACCGCTGAAGAGGCTGCCATGGCTTATGACCGAGCCGCGTTCAAGATGAGGGGCTCCAAGGCTTTGCTCAATTTCCCAGCTGAAATTGTTGCTGCTGCTACTGCAACAGAGTTATCTTTCAAAAGTAGTAGTAATAATAATAATAATAATAATAATAACAATCCCGATGCTGTTTCTGATTCCAGTGCTGGTAGCTCTTGCACGAACAATTCCACTTGGGTAAATAGGAATCAGTCAGAAATCACAAGTGGCACAGGTTAG 675 0.4756 MPPTFSHLCYSIDICQVQNHLPTCHSFKNQSQTDPKKKPTNMGSKKTYEEEESTALFSHSQTQTDLLLPFNENDPQDMVIYQVLHEANALTNTFLPQPTRNITKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGSKALLNFPAEIVAAATATELSFKSSSNNNNNNNNNNPDAVSDSSAGSSCTNNSTWVNRNQSEITSGTG* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2609 224 CDD AP2 105 165 IPR001471 GO:0003700|GO:0006355
Gso11g2609 224 SUPERFAMILY DNA-binding domain 106 166 IPR016177 GO:0003677
Gso11g2609 224 MobiDBLite consensus disorder prediction 27 51 - -
Gso11g2609 224 Gene3D AP2/ERF domain 105 166 IPR036955 GO:0003700|GO:0006355
Gso11g2609 224 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Gso11g2609 224 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Gso11g2609 224 MobiDBLite consensus disorder prediction 179 224 - -
Gso11g2609 224 SMART rav1_2 106 170 IPR001471 GO:0003700|GO:0006355
Gso11g2609 224 Pfam AP2 domain 106 156 IPR001471 GO:0003700|GO:0006355
Gso11g2609 224 PANTHER DNA-BINDING DOMAIN 97 186 IPR044808 GO:0003700|GO:0009873
Gso11g2609 224 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 97 186 - -
Gso11g2609 224 ProSiteProfiles AP2/ERF domain profile. 106 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2609 Gso-Chr11 42059438 42060400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2609 68 168 AP2-EREBP Transcription Factor Family AT3G23240 53.636 2.76e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g2609 AP2 5.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2609 K13433 - gmx:100775316 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0677 15 6086080 6087019 Gso11g2609 11 42059438 42060400 GST