Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2608 ATGGATATTCATAGTAATCATGGTGCAACTTCTGAAGGGATTCTTGAGAATGTGTGGGCCAAAATTATGAGCAGTGATGGAGCAGATGGAAGAAAAGGTGATGCAGCAGAATCTTCAAACTCTTGGGAAGAACTTCCTAACCTTGATGGAAGAGAAGGGTCCATGGAAATTCTACAAAGGCTTCCAAGTTTAGGGAGGTGGATATCAATGGGAGCTGATTTCTGGGAAGAAGTTTTAGATGGTATTATTCTACCTAACACAAGCAATAGAGAAGATTCTAGCCATAACAACTTGGAAATTGGAAGTGCTAATGAAACTCGTAACAAGGTGGAAGATGCTCTGAGAATAGAGAAGGCAATTACAAAACACTACAGGGGAGTTAGGAGAAGGCCATGGGGTAAATATGCTGCGGAGATTAGAGACTCATCCAAGAAAGGTGCTAGAGTTTGGCTAGGAACATTTGACACTGCTGAAGAAGCAGCTTTGGCTTATGACAAGGCTGCTTTGAGGATTAGAGGTCCAAAGGCATACCTTAATTTCCCACTTGAGAGGGGTGCAAATGCTTTAGCATGTGACCACAAAGGAACTAATCATCTTGCTTGCACATGCATAGGGAACAAAGAAAAATTAATCAACTCCAGGAAGAGAGCATCAATGGAAAGGGAAGCATTTGATGATATGGTGAATGAACAACCTGCAACAAAAAAGTTGGAATGCATGGTAGAAAATGAACTAGGTGCTTTTGTATTTCAGGACCTAGGAAGTGATTATTTGGACAGTTTACTGTCTTCTTTTTGA 798 0.4085 MDIHSNHGATSEGILENVWAKIMSSDGADGRKGDAAESSNSWEELPNLDGREGSMEILQRLPSLGRWISMGADFWEEVLDGIILPNTSNREDSSHNNLEIGSANETRNKVEDALRIEKAITKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFDTAEEAALAYDKAALRIRGPKAYLNFPLERGANALACDHKGTNHLACTCIGNKEKLINSRKRASMEREAFDDMVNEQPATKKLECMVENELGAFVFQDLGSDYLDSLLSSF* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2608 265 PRINTS Ethylene responsive element binding protein signature 124 135 IPR001471 GO:0003700|GO:0006355
Gso11g2608 265 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Gso11g2608 265 CDD AP2 122 181 IPR001471 GO:0003700|GO:0006355
Gso11g2608 265 Gene3D AP2/ERF domain 122 183 IPR036955 GO:0003700|GO:0006355
Gso11g2608 265 MobiDBLite consensus disorder prediction 26 48 - -
Gso11g2608 265 Pfam AP2 domain 123 173 IPR001471 GO:0003700|GO:0006355
Gso11g2608 265 ProSiteProfiles AP2/ERF domain profile. 123 181 IPR001471 GO:0003700|GO:0006355
Gso11g2608 265 SMART rav1_2 123 187 IPR001471 GO:0003700|GO:0006355
Gso11g2608 265 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 16 265 - -
Gso11g2608 265 SUPERFAMILY DNA-binding domain 123 182 IPR016177 GO:0003677
Gso11g2608 265 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2608 Gso-Chr11 42055523 42056642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2608 14 265 AP2-EREBP Transcription Factor Family AT4G18450 38.235 4.09e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g2608 AP2 3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2608 - - gmx:100820226 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0678 15 6090279 6091248 Gso11g2608 11 42055523 42056642 GST