Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2603 ATGAGAGCCAATATGAATTTTCATGCCCAAACTTCCAAAGCACTGTCAAATCTTTTGCTTTGGCCTTCTCTAACAACCTTGCTTCTCCTTATTATTGGAGCTCAGGTTGCCTACAGTTTCCAAAATATAAGTGTTGGTGTGGTCATTGATGTCAATTCAGTGGCTGGAAAACAACAGAGAAGAGCCATGCAAATTGCATCTCAAAGTTTCAATAATTATTCAAAGAATCATAACATAAACCTTTTCTTTAGTAACTCTGGGGGAATCCCATTACAAGCAGCTTCAGCTGCTGAAGAACTAATCATGAAGAAGAAAGTTAAAGTGATTGTTGGCATGGGGACATGGCAAGAAGCAGCTCTAGTTGCTGACCTTGGAAACAAAGCTCAAATTCCAATTATTTCATTTTCTTCTCCTTCAATAGTCCCTCCTTTAATGCAACATCGTTGGCCTTTTTTGATTCAAATGGCTAAAGATCAGGCTGCACACATGAACTGCATAGCAGATATTATCCACGCGTACAACTGGCAGAAGGTTATAGCTATATATGAAGACAACCCTTATAGTGGTGATTCTGGATTGTTAAGCCTCTTTTCCGAGGCTCTCCAAAAGGGTAACGCGCAGATTGAGAACCGATTGGTTCTTCCACATTTCACTTCTTTATCTGATCCAAAAGGGGTTGTTCTTGATGAATTGTTTAAGCTGTTGCCACTAAAATCTCGTGTTTTTGTTGTACTTCAAGCATCATTCCCTATGGTAACTCACTTGTTCAGAGAAGCCAAGAAGATTGGATTCTTGGGGAAAGATTCGGCTTGGATAATCAACGAGGGGATCACAAGTATGTTGGACTTTGCAAATAAATCTGTTTTATCCTCTATGGAAGGTACTTTAGGAATCAAAACCTACTATTCTACAAATTCTACTGCTTATACTCATTTGCAGGAAAATTTCCAATCTGAGCATGCTGAAACAGCAGGCACTAAACCAGGATCAGATGCATTACGAGCTTATGATAGTGTTATAATCATTACAGAGGCCTTAGAGAAAATGAATAGAAAATCTAGTAACTCAAAGCCAAGGGTGTTCTTGGAGAAAATTTTGTCTAGCAATTTTAATGGTTTAAGTGGTAATATAAGATTCCAAGGAAATCATCTATCCAACACTGCAGTATTGAGAGTCATCAATGTGGTTAATAGGGACTACAAGGAATTGGACTTTTGGACCCCAAAATTCAAGTTTGCTGGATCTCTTGGGGGTGATTATGCTACAAATAACTTAGCCGGCCCAGTGGTTTGGCCAGGAGGCCTAATTTCTGCTGATCCTATTGGATGGAAAATGCCTACGGATACAGAACCTTTAAAAGTGGCAATTCCCACAAACCCTGCTTTTGTTAATTTTTTGAAGGAAGACTCCCAAAAGCAATATAGTGGTTTCTGTATTGATCTTTTCCACGAGGCACGGAAAATTCTGAGTGACAAGTATTCTGGGATGCCTTATGTGTTTCACCCCTTTAATGAATCCTATGATAAACTTCTACTGAATGTCATAAACAAGTCCCATGATGTTATTGTAGGAGATGTAACAATACTTGCTGAACGATCAAAGGATGTGTGGTTCACTCAGCCATACACTGAGTCAGGCTTATCACTTATTCTTCCAATAGAGACTGAAGGGTCAGCATGGTTGTTTATGAAACCTTTTAGCTGGGAAATGTGGATCGCAACTATTGGAATCCTCATCTACACAATGTTTATCATATGGTTCCTGGAGCATCACTTGAATCCAGATTTTGGTGGACCATTGAAAAATCAGTTCAGCACCACGCTGTGGTTTGCTTTTTCTTCTCTATTTTTTGCTCACAAGGAGAAAATAAACAGCAACTCTGCACGAGTAGTGGTTGGAGTATGGCTATTTCTTGTGTTTGTTCTAACCTCAAGCTACACTGCCAACCTTTCCTCAATGCTTACTGTCAAACGATTGAATTCAGGAAGAGATATTGATTGGCTAAAGCAAAACAACTTATCAGTTGGTTGTGATATCAGCTCCTTTGTAAAGAATTACATCATAAACGTGTATGATTTCCATCCGCAGCAAATAATAGAGGTCAACGGAGAAGATGACATTTTGAATAAATTCAAAAGCAAAAATATTTCTGCCCTCTTTCTTGAGAGCCCCTATGAGAAGGTTTTCATGAATAAGTACTGCAAGGATTACACTGCAGTTACAGCTGCCAATAAATTTGGAGGACTTGGCTTTGTATTTCAAAAGGGATCTCCCATGGCAAGAGACTTTTCAGGAGCCATTTTAACACTAGCAGAAATGGGAAAGCTAAAAACTTTGGAAGAGATATGGTTGACCCCTCCAAATGAATGCTCAAATGGCTCAACATCTCCAGAAACTGAGAGCCTGACCCTCCACAACTTTTGGGGTCTCTATATCATAAGTGCTGCCATATCCACCATCTGCTTCGTGAGGGCCTTATTGACGAAATGGTTACATGACGACCACAACCATTATCATCATGAAGAGAAAGCTCAACTTCAAGGCAATATAACTGCTAATGATGATAATAGTGTTTGGAAGAAGGCAATTATAATCAGTACAGGCTTTTACAATACTATGAATAACAAAACTTTAGGCAGAGCTGCAACTTTTAGTGGAACACATCGTCAGAATTCCTCAAGGTGGGAGAGTATAAGCACCTCTGATGATGTGGCTAATCTACAGCGTTCTATGTCAGCTGTCAAAGATATGCTGTAG 2757 0.3935 MRANMNFHAQTSKALSNLLLWPSLTTLLLLIIGAQVAYSFQNISVGVVIDVNSVAGKQQRRAMQIASQSFNNYSKNHNINLFFSNSGGIPLQAASAAEELIMKKKVKVIVGMGTWQEAALVADLGNKAQIPIISFSSPSIVPPLMQHRWPFLIQMAKDQAAHMNCIADIIHAYNWQKVIAIYEDNPYSGDSGLLSLFSEALQKGNAQIENRLVLPHFTSLSDPKGVVLDELFKLLPLKSRVFVVLQASFPMVTHLFREAKKIGFLGKDSAWIINEGITSMLDFANKSVLSSMEGTLGIKTYYSTNSTAYTHLQENFQSEHAETAGTKPGSDALRAYDSVIIITEALEKMNRKSSNSKPRVFLEKILSSNFNGLSGNIRFQGNHLSNTAVLRVINVVNRDYKELDFWTPKFKFAGSLGGDYATNNLAGPVVWPGGLISADPIGWKMPTDTEPLKVAIPTNPAFVNFLKEDSQKQYSGFCIDLFHEARKILSDKYSGMPYVFHPFNESYDKLLLNVINKSHDVIVGDVTILAERSKDVWFTQPYTESGLSLILPIETEGSAWLFMKPFSWEMWIATIGILIYTMFIIWFLEHHLNPDFGGPLKNQFSTTLWFAFSSLFFAHKEKINSNSARVVVGVWLFLVFVLTSSYTANLSSMLTVKRLNSGRDIDWLKQNNLSVGCDISSFVKNYIINVYDFHPQQIIEVNGEDDILNKFKSKNISALFLESPYEKVFMNKYCKDYTAVTAANKFGGLGFVFQKGSPMARDFSGAILTLAEMGKLKTLEEIWLTPPNECSNGSTSPETESLTLHNFWGLYIISAAISTICFVRALLTKWLHDDHNHYHHEEKAQLQGNITANDDNSVWKKAIIISTGFYNTMNNKTLGRAATFSGTHRQNSSRWESISTSDDVANLQRSMSAVKDML* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2603 918 PIRSF IGluLR_plant 13 916 IPR017103 -
Gso11g2603 918 CDD PBP1_GABAb_receptor_plant 44 412 IPR044440 -
Gso11g2603 918 PANTHER GLUTAMATE RECEPTOR 6 915 - -
Gso11g2603 918 SUPERFAMILY Periplasmic binding protein-like I 41 407 IPR028082 -
Gso11g2603 918 Gene3D - 447 559 - -
Gso11g2603 918 Gene3D - 560 694 - -
Gso11g2603 918 Pfam Bacterial extracellular solute-binding proteins, family 3 453 785 IPR001638 -
Gso11g2603 918 Gene3D - 158 407 - -
Gso11g2603 918 Pfam Receptor family ligand binding region 60 395 IPR001828 -
Gso11g2603 918 SMART GluR_14 453 786 IPR001320 GO:0015276|GO:0016020
Gso11g2603 918 Gene3D - 54 387 - -
Gso11g2603 918 SUPERFAMILY Periplasmic binding protein-like II 435 785 - -
Gso11g2603 918 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 6 915 - -
Gso11g2603 918 Pfam Ligand-gated ion channel 786 815 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2603 Gso-Chr11 42006458 42012944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2603 43 837 Ion Channels AT2G29120 32.775 1.08e-128 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2603 - - gmx:112997619 1793.48