Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2602 ATGAATTTTCATGCCCAAACTTACAAAGCAGGTAAATATCTTTTGCTTTGGCCTTCTCTAAAAATCTTGCTTCTCCTATTCAAGTGCCTTATTGGAGCTCAGGTTGCCTACAGTTTCCAAAATACAAGTGTTGGCGTGGTAATTGATGCCAATTCAGAGGTTGGAAAACAACAGAAGAGAGCCATGCATATTGCAGCTCAAACTTTCAATAATAACTCAAAGAATCACAACAACATAATCCTTTTCTTCCACGACTCTGGTGGAATCCCTTTACAAGCAGCTTCAGCTGCTGAAGAACTAATCATGAAGAAGAAAGTTAAAGTGATTGTTGGCATGGGGACATGGCAAGAAGCAGCTCTAGCTGCTGACCTTGGAAACAAAGCTCAAATTCCAATTATTTCATTTTCTTCTCCTTCAATAGTCCCTCCTTTAATGCAACATCGTTGGCCTTTTTTGATTCAAATGGCTAAAGATCAGGCTGCACACATGAACTGCATAGCAGATATTATCCACGCGTACAACTGGCAGAAGGTTATAGCTATATATGAAGACAACCCTTATAGTGGTGATTCTGGATTGTTAAGCCTCTTTTCCGAGGCTCTCCAAAAGGGTAACGCGCAGATTGAGAACCGATTGGTTCTTCCACATTTCACTTCTTTATCTGATCCAAAAGGGGTTGTTCTTGATGAATTGCTTAAGCTGTTGCCACTAAAATCTCGTGTTTTTGTTGTACTTCAAGCATCATTCCCTATGGTAACTCACTTGTTCAGAGAAGCCAAGAAGATTGGATTCTTGGGGAAAGATTCGGCTTGGATAATCAACGAGGGGATCACAAGTATGTTGGACTTTGCAAATAAATCTGTTTTATCCTCTATGGAAGGTACTTTAGGAATCAAAACCTACTATTCTACAAATTCTACTGCTTATACTCATTTGCAGGAAAATTTCCAATCTGAGCATGCTGAAACAGCAGGCACTAAACCAGGATCAGATGCATTACGAGCTTATGATAGTGTTATAATCATTACAGAGGCCTTAGAGAAAATGAATAGAAAATCTAGTAACTCAAAGCCAAGGGTGTTCTTGGAGAAAATTTTATCTAGCAATTTTAATGGTTTAAGTGGTAATATAAGATTCCAAGGAAGTCATCTATCCAACACTGCAGTATTGAGAGTCATCAATGTGGTTAATAGGGAATACAAGGAATTGGACTTTTGGACCCCAAAATTCAAGTTTGCTGGATCTCTTGAAATACTGAAAGACAGAGAGACAAGGGGTGATTATGCTACAAATAACTTAGCTGGCCCAGTGGTTTGGCCAGGAGGCCTAATTTCTGCTGATCCTATTGGATGGAAAATGCCTACGGATACAGAACGTTTAAAAGTGGCAATTCCCACAAACCCTGCTTTTGTTAATTTTTTGAAGGAAGACTCCCAAAAGCAATATAGTGGTTTCTGTATTGATCTTTTCCACGAGGCACGGAAAATTCTGAGTGACAAGTATTCTGGGATGCCTTATGAGTTTCACCCCTTTAATGAATCCTATGATAAACTTCTACAGAATGTCATAAACAAGTCCCATGATGTTATTGTAGGAGATGTAACAATACTTGCTGAACGATCAAAGGATGTGTGGTTCACTCAGCCATACACTGAGTCAGGCTTATCACTTATTCTTCCAATAGAGACTGAAGGGTCAGCATGGTTGTTTATGAAACCTTTTAGCTCGGAAATGTGGATCGCAACTATTGGAATCCTCATCTACACAATGTTTATCGTATGGTTCCTGGAGCATCACTTGAATCCAGATTTTGGTGGACCATTGAAAAATCAGATCAGCACAACACTGTGGTTTGCTTTTTCTTCTCTATTTTTTGCTCATAAGGAGAAAATAAACAGCAACTCTGCACGAGTAGTAGTTGGTGTATGGCTATTTCTTGTGTTTGTTCTAACCTCAAGCTACACTGCCAATCTTTCGTCATTACTTACTGTCAAACGATTGAAATCTGGAAGAGATGTTGAGTGGCTAAAGCAAAACAACTTATCAGTTGGTTGTGATAACAGCAGTTCGTTTGTAAAGAACTACATGATAAATGTGTATAATTTCACACCACAGCAAATAATAGAGGTGGATGGTGAACATGACATTGTGGATAAATTCAAAAGCAAAAATATTTCTGCCCTCTTTCTTGAGAGCCCGTATGAGAAGGTTTTCTTGAATAAGTACTGCAAGGATTACACTGCAATTACAGCTACCTATAAATTTGGAGGACTGGGCTTTGTATTTCAAAAAGGATCTCCCATGGCAAAAGACTTTTCTGAAGCCTTTTTAACACTAGCGGAAAATGGAGCACTAAAAACTTTGGAAGAGAAATGGTTGACCCCTTCCAAGGAATGCTCAAACGGCTCAACATCTCCAGAAACTGAGAGCCTGACCCTCCACAACTTTTGGGGTCTCTATATCATATGTGCTGCCATATCCACCATATGCTTTGTGATGGCCTTATTGAAAAATCACTTAAATAAGCATAACCATATTGAAGAGGAAGATCAACATCAAGACAGTGCAACAGCTGATGATGATAGTGTTTGGAAGAAAGCACTCAGAATTGGTACAGGCTTTTACAATAATGTGAATAACAAAACTTTAGGTAGAGCTGCAACTTTTGGTGGAATGCAGCTTACACGTCGCCGGAATTCCTCAAGATGGCAGAGCATAAGCACTTCTGATGATGTGGCTAATCCACAGAGTTCTCAATCAGCAGTCAAAGATATGCTGTAA 2781 0.3923 MNFHAQTYKAGKYLLLWPSLKILLLLFKCLIGAQVAYSFQNTSVGVVIDANSEVGKQQKRAMHIAAQTFNNNSKNHNNIILFFHDSGGIPLQAASAAEELIMKKKVKVIVGMGTWQEAALAADLGNKAQIPIISFSSPSIVPPLMQHRWPFLIQMAKDQAAHMNCIADIIHAYNWQKVIAIYEDNPYSGDSGLLSLFSEALQKGNAQIENRLVLPHFTSLSDPKGVVLDELLKLLPLKSRVFVVLQASFPMVTHLFREAKKIGFLGKDSAWIINEGITSMLDFANKSVLSSMEGTLGIKTYYSTNSTAYTHLQENFQSEHAETAGTKPGSDALRAYDSVIIITEALEKMNRKSSNSKPRVFLEKILSSNFNGLSGNIRFQGSHLSNTAVLRVINVVNREYKELDFWTPKFKFAGSLEILKDRETRGDYATNNLAGPVVWPGGLISADPIGWKMPTDTERLKVAIPTNPAFVNFLKEDSQKQYSGFCIDLFHEARKILSDKYSGMPYEFHPFNESYDKLLQNVINKSHDVIVGDVTILAERSKDVWFTQPYTESGLSLILPIETEGSAWLFMKPFSSEMWIATIGILIYTMFIVWFLEHHLNPDFGGPLKNQISTTLWFAFSSLFFAHKEKINSNSARVVVGVWLFLVFVLTSSYTANLSSLLTVKRLKSGRDVEWLKQNNLSVGCDNSSSFVKNYMINVYNFTPQQIIEVDGEHDIVDKFKSKNISALFLESPYEKVFLNKYCKDYTAITATYKFGGLGFVFQKGSPMAKDFSEAFLTLAENGALKTLEEKWLTPSKECSNGSTSPETESLTLHNFWGLYIICAAISTICFVMALLKNHLNKHNHIEEEDQHQDSATADDDSVWKKALRIGTGFYNNVNNKTLGRAATFGGMQLTRRRNSSRWQSISTSDDVANPQSSQSAVKDML* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2602 926 Gene3D - 455 568 - -
Gso11g2602 926 MobiDBLite consensus disorder prediction 900 926 - -
Gso11g2602 926 PIRSF IGluLR_plant 14 924 IPR017103 -
Gso11g2602 926 Pfam Receptor family ligand binding region 59 394 IPR001828 -
Gso11g2602 926 Pfam Ligand-gated ion channel 795 824 IPR001320 GO:0015276|GO:0016020
Gso11g2602 926 Gene3D - 569 704 - -
Gso11g2602 926 SMART GluR_14 459 795 IPR001320 GO:0015276|GO:0016020
Gso11g2602 926 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 923 - -
Gso11g2602 926 Gene3D - 158 407 - -
Gso11g2602 926 PANTHER GLUTAMATE RECEPTOR 2 923 - -
Gso11g2602 926 Gene3D - 737 800 - -
Gso11g2602 926 SUPERFAMILY Periplasmic binding protein-like I 44 407 IPR028082 -
Gso11g2602 926 CDD PBP1_GABAb_receptor_plant 43 412 IPR044440 -
Gso11g2602 926 Pfam Bacterial extracellular solute-binding proteins, family 3 461 794 IPR001638 -
Gso11g2602 926 Gene3D - 51 387 - -
Gso11g2602 926 SUPERFAMILY Periplasmic binding protein-like II 442 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2602 Gso-Chr11 41995070 42000275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2602 44 850 Ion Channels AT2G29120 32.544 9.22e-130 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2602 - - gmx:100818078 1791.16