Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2565 ATGTCAGAAGGGTATGAAATTCATAACAATGAGGAAACTTCATCGGGATGTTCCCAGAAATGCTCTTCATTTGACTTGAATGAAGAATTAGCTTGCAGTACTGAAGATAACACTGATACAAAAGAGTGCTATGAGCTCACAACAACCAATGAGAAAGCAAAGGATGAGGGCACTTCAGCGAATGGAAGTAGCATATCATCAAGAGAAGGAAATGAGAGAAGAGGAACAACGGTAAGACAATATGTTAGATCAAAGATGCCTAGGCTTCGGTGGACTCCTGAGCTTCATCATTCATTTGCGCATGCTGTTGAAAGACTTGGTGGTCAAGAGAGAGCTACACCCAAGTTGGTGCTTCAACTGATGAATGTGCGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGGAGCAAGAAACTTGACGAGGCTGGGCAAGTACTAAGTCAAACGTACAGGTCAAACCAGGAAGTAGTTCGTAGACCTCTGATACTCCATCAGTCCATAAGTCCTCAACAACATCTTAAGATGGGAAATGGTGGAATTATTCTAGCAAGTAATTTCAACAAACATAGTCATTTCCCAAGTCTCCTGCAGCCCTCCTTCTCCCTATCACGTTCACTTACAAACGACACCGATTCAAGGCACCAGCATTGGTACATCAATCATCAAGCTTTTAGAATACCAATAGCTTCAGGCCAAATTCAACCAAAGGATACACGCGGCAGAATTGCCCCCATGAGACCAAGCCAATTGCTTGAAGAGAAAAGGTGGCCTCCGTTAGAAATTTTGAACAATCATCAATCGAAGTTCCAAAAGTTACCTTCCATTGATTCTCCTAAAATTGGGTCACAAGCTATTCAACCAGCTGAATGGAGTAGTTTTATGAACAACACAAGCATCATAGATTATCTATCGAACAACTCCAATGAACCTCGCAACAATTCCAACAGCTTAAAGCTAGAATTTGGTCCTCCATTTCGGATTAAGAAAGACGAGCAACAATTTCTTGATTTGCAACTGGGTTTGAGTCACACATGTACAGTTGGAACCGATGGCAAGATGGATCATTATAGAGAAACCCCAGAAATCAGCACTAAGCTTTCACTTTCTTAG 1122 0.4189 MSEGYEIHNNEETSSGCSQKCSSFDLNEELACSTEDNTDTKECYELTTTNEKAKDEGTSANGSSISSREGNERRGTTVRQYVRSKMPRLRWTPELHHSFAHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSQTYRSNQEVVRRPLILHQSISPQQHLKMGNGGIILASNFNKHSHFPSLLQPSFSLSRSLTNDTDSRHQHWYINHQAFRIPIASGQIQPKDTRGRIAPMRPSQLLEEKRWPPLEILNNHQSKFQKLPSIDSPKIGSQAIQPAEWSSFMNNTSIIDYLSNNSNEPRNNSNSLKLEFGPPFRIKKDEQQFLDLQLGLSHTCTVGTDGKMDHYRETPEISTKLSLS* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2565 373 Pfam Myb-like DNA-binding domain 89 139 IPR001005 -
Gso11g2565 373 MobiDBLite consensus disorder prediction 54 71 - -
Gso11g2565 373 Gene3D - 86 143 - -
Gso11g2565 373 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 373 - -
Gso11g2565 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 143 IPR017930 -
Gso11g2565 373 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 373 IPR044848 GO:0003700
Gso11g2565 373 MobiDBLite consensus disorder prediction 54 77 - -
Gso11g2565 373 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 87 142 IPR006447 GO:0003677
Gso11g2565 373 SUPERFAMILY Homeodomain-like 85 141 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2565 Gso-Chr11 41714250 41719151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2565 78 216 G2-like Transcription Factor Family AT2G42660 47.586 2.10e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso11g2565 Myb_DNA-binding 1.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2565 - - gmx:102669757 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0712 15 6388131 6392829 Gso11g2565 11 41714250 41719151 GST
Gso5g1353 5 37023300 37029554 Gso11g2565 11 41714250 41719151 PCT
Gso8g0975 8 9010291 9016225 Gso11g2565 11 41714250 41719151 PCT
Gso11g2565 11 41714250 41719151 Gso5g1353 5 37023300 37029554 PCT
Gso11g2565 11 41714250 41719151 Gso8g0975 8 9010291 9016225 PCT