Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2561 ATGGCCGACGTCGTTTCCAAGTCCCCAACCCCAACCAGCAACCTCATCAGCCCCAACAAGAAGGAAACATCGAACCTTTTACTGGGTCGTTTCGAGATTGGGAAGCTCCTCGGGCATGGAACCTTCGCCAAGGTGTACTACGCGCGTAACATCAAAACCGGCGAAGGCGTGGCCATCAAGGTAATCGACAAGGAGAAGATCCTCAAAGGAGGTTTGGTGGCGCACATCAAGCGTGAGATCTCTATCCTGCGCCGTGTTCGCCACCCTAACATCGTTCAGCTCTTCGAAGTCATGGCCACCAAGAGCAAGATCTATTTCGTAATGGAATACGTTCGCGGCGGCGAGCTTTTCAACAAGGTCGCCAAGGGAAGGCTCAAAGAAGAGGTCGCGAGAAAGTACTTTCAGCAATTAATCTCTGCTGTGGGATTCTGCCACGCCAGAGGGGTGTACCACAGAGATCTCAAGCCTGAAAATTTGTTGCTTGATGAGAATGGCAATCTCAAAGTCTCTGATTTTGGATTGAGTGCGGTGTCTGATCAAATCCGACAGGATGGTCTTTTCCACACTTTTTGTGGGACACCTGCGTATGTTGCTCCTGAGGTTTTGGCGAGGAAAGGGTACGATGGTGCTAAGGTGGATCTTTGGTCTTGTGGGGTGGTGTTGTTTGTGTTGATGGCGGGGTATTTGCCCTTTCATGACCAGAATGTGATGGCAATGTATAAGAAGATTTATAGAGGGGAGTTTCGGTGTCCGAGGTGGTTTTCTCCTGATTTGTCCAGGCTTCTCACAAGGCTTCTTGATACCAAGCCTGAAACCCGGATTGCGATTCCTGAAATTATGGAGAATAAGTGGTTCAAGAAAGGGTTTAAGCAGATCAAGTTTTATGTGGAGGATGATAGGCTTTGCAATGTGGTGGATGATGATGGCCTTATGGACAATGATGATGACACTGCTTCGATTGTTTCTGTTGCTTCGTTTTCGGATTACTCGGTTTCCGAGTCTGATTCTGAGATTGAGACTAGGAGGAGGATCAATGCTCCCTTGCCTAGACCTCCTAGTTTGAATGCCTTTGACATTATATCGTTCTCGCCGGGCTTTAATCTTTCGGGGTTGTTTGAGGAGAAAGAGGATGAGACAAGGTTTGTGACTGCTGCACCGGTTAACAGGATCATTTCCAAGCTGGAGGAGATTGCTCAGTTGGTTAGGTTTTCGGTGAGGAAGAAGGATTGCAGGGTGAGTTTGGAGGGTACCAGAGAGGGGGTTAGAGGGCCTTTGACTATTGCTGCTGAGATATTTGAGTTGACACCTTCTTTGGTTGTGGTGGAGGTGAAGAAAAAAGGAGGGGATAGAGCCGAGTATGAGAGGTTTTGTAACGATGAGTTAAAGCCTGGATTGCAGAATTTGATGGTGGAGGAGTCTGCTACTTCTTCAGAGTTGTCTACACCTATTCAACCTTCCCTACTACGTGGCCTTTCTGAACCTGTGCCGGATATTTCTTCTGATATTGAAACCCCGCTCTGTATACCTTCTGATGATTGA 1539 0.4776 MADVVSKSPTPTSNLISPNKKETSNLLLGRFEIGKLLGHGTFAKVYYARNIKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKSKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSRLLTRLLDTKPETRIAIPEIMENKWFKKGFKQIKFYVEDDRLCNVVDDDGLMDNDDDTASIVSVASFSDYSVSESDSEIETRRRINAPLPRPPSLNAFDIISFSPGFNLSGLFEEKEDETRFVTAAPVNRIISKLEEIAQLVRFSVRKKDCRVSLEGTREGVRGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYERFCNDELKPGLQNLMVEESATSSELSTPIQPSLLRGLSEPVPDISSDIETPLCIPSDD* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2561 512 Gene3D Kinase associated domain 1, KA1 349 470 - -
Gso11g2561 512 CDD CIPK_C 355 466 - -
Gso11g2561 512 SUPERFAMILY Protein kinase-like (PK-like) 27 286 IPR011009 -
Gso11g2561 512 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2561 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Gso11g2561 512 SMART serkin_6 31 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2561 512 ProSiteProfiles Protein kinase domain profile. 31 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2561 512 PANTHER - 8 477 - -
Gso11g2561 512 Gene3D Transferase(Phosphotransferase) domain 1 21 341 - -
Gso11g2561 512 Pfam NAF domain 351 407 IPR004041 GO:0007165
Gso11g2561 512 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 477 - -
Gso11g2561 512 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524
Gso11g2561 512 CDD STKc_SnRK3 30 284 - -
Gso11g2561 512 ProSiteProfiles NAF domain profile. 349 373 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2561 Gso-Chr11 41667701 41669879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2561 1 472 CBL-interacting serine-threonine protein kinases AT4G18700 77.378 0.0 750
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gso11g2561 Pkinase 6.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2561 - - gmx:100814720 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0716 15 6443065 6445224 Gso11g2561 11 41667701 41669879 GST