Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2560 ATGACGCCGTTCTTCCTACTTCACTACCACTATAACCGCGAACTATCCCACTTCACCAACAACTATATCCCACCCTCTGTCCCTTTTTTTTCTCTCTTCGCTTTCTTTCTTTCAATTCATACTCACCATTGGGGTATAATAGGGACACGACATTGTAACGGTGGAGTTAAGAAAATGAAGCCCTGCTGCACATTCTTCATTCTCCTTTCGCTAGTTGTTATTCTCGTTGAATCTTCATGCAAAAACGAAGACCATGAGCTGGTGTCAAAGGCGTTCCAATCTGTGTCTGGATTCAACTCTTCCTGGTTCGAAACAGGTTCTAATTGTTCAAATGCTGTGATTAAAGGGATAAATCTTTCGTCCAAAAACCTAAGTGGGAACATCTCCTGGAAGTATCTGAGGAACATGTCCAAGTTGGAGGTTCTAGATCTGTCTGGGAATTTTCTGCAAGGCCAAGTCCCAAATTGGTTCTGGAGAAGCTCAACCTTATTGGTAGTGAACCTTTCCAGCAACAGGTTCGGAGGGAGCATTCACCCGGCCACTTCCCAAAACAGTTCCTTTTCATCGCTGCAAAATCTCAATCTCTCACACAACAGGTTCACCAACCAGCTTCACCTCTCTGGTTTCTCAAATCTTAAAAGCCTCGACCTTTCGCACAACAACCTCGGAACCTTGCCTTCCGGGTTCCAAAACCTCACTACCAATCTACACCACCTCGATCTCTCCAACTGCAACATCAAAGGAAACGTAAAACCCATCTCCTCCCTCACCAAACTTTCATCCTTGGATTTATCAAACAACACGTTGAACGGTAGTTTCCCCTCTGACTTCCCTCCTCTGAACAACATCAAATTCTTGAACATCTCCCACAACAACTTCAAAGCCTCCACCACCTTAGACAGGTTCATAAAGTTCGGCAAATCAGCGTTCATTCACGCCGGCAACAACTTCAACTACTACAACGCATCAAAAACGCCAAAGCTTCGTTCAACTCCAACTCCAACCCCACCGCACCAACAGCCCCACCACATTCACGCGAAGAAGAAGAAGCGGCCAAAAGAAAAACAAAAGTCAAAACACAAAACCAGAACCATGATGATTGTGGCCTCGGCACTTGTTGTCGTTGTCGCGTTGTGCATGTGCTGGGTGTGGTGTTGCAGGAGGAAGAGGCAATTGGCGAAAAGGAGCAAGTGGGCGATCTCGAAGCCGGTCCCACTGAGCATGAAGATGATGGAAAAATCAGGACCGTTCGCGTTCGAGACCGAGTCAGGGACATCATGGGTTGCTGACCTCAAAGAACCCTCTTCCGCAGCCGTGGTCGTGTTCGAGAAGCCACTCATGAAACTCACCTTCGTCGACCTTCTCGCTGCCACGTCACACTTCGGAAAAGACTCTCTCCTCGCTCAGGGCAGGTGTGGGCCCGTTTATCGCGCTGTCTTACCCGGAGACATCCACGTGGCAATCAAGGTCCTCGAAAACGCCAGAGACGTCCATCATCATGAAGCTGTCGCTCTCTTCGTTGACATTTCCCAACTCAAACACCCCAATCTCTTGCCCCTCTCCGGTTACTGTATTGCAGGTAAGGAGAAGCTGGTGTTGTATGAGTTTATGTCGAACGGGGATTTAGGTAGGTGGTTGCAGGAGCTACCAACAGGGGAGACTAACGTGGAGGATTGGAGTGGTGACACGTGGGACATTATTCATAACGGCGCCGTTTCTCGAGCCTCACCCCCCGAAAAAATGGGGTGGTTAATACGGCACCGTATTGCGGTGGGTGTGGCGCGTGGATTAGCGTTTCTCCACCACGCGGGGTCGAGGCCCGTCGTGCACGGCCACCTGGTGACGTCGAACGTGCTTCTCGGCGACGACTTCGAGCCGCGGATCGCGGATTTCGGGTTTCGGAAACTCGGGCGAGAGAGCGCGGCGGCGAATTGTTCCACCGAGACGGACGTTTACTGTTTCGGGGTGGTGCTGATGGAGCTTCTGACGGGGAAGGCCGGCACGGCGGAGACGGTGGTTTGGGTGAGGAAGGCGGTGAGGGAGGGCCACGCGGTGAGGACGTTGGATGAGAGGCTTAAACTCGGCGGCGACTCGGAGAGTGAGATGGTGGAGAGTCTCCGAGTCGCCTATTTGTGTACGGCCGAGTCTCCGGGGAAGAGGCCCACCATGCAGCAAGTGTTGGGCCTTCTCAAAGATATTCACCCGAGTCATGGACTCGACTGA 2223 0.5128 MTPFFLLHYHYNRELSHFTNNYIPPSVPFFSLFAFFLSIHTHHWGIIGTRHCNGGVKKMKPCCTFFILLSLVVILVESSCKNEDHELVSKAFQSVSGFNSSWFETGSNCSNAVIKGINLSSKNLSGNISWKYLRNMSKLEVLDLSGNFLQGQVPNWFWRSSTLLVVNLSSNRFGGSIHPATSQNSSFSSLQNLNLSHNRFTNQLHLSGFSNLKSLDLSHNNLGTLPSGFQNLTTNLHHLDLSNCNIKGNVKPISSLTKLSSLDLSNNTLNGSFPSDFPPLNNIKFLNISHNNFKASTTLDRFIKFGKSAFIHAGNNFNYYNASKTPKLRSTPTPTPPHQQPHHIHAKKKKRPKEKQKSKHKTRTMMIVASALVVVVALCMCWVWCCRRKRQLAKRSKWAISKPVPLSMKMMEKSGPFAFETESGTSWVADLKEPSSAAVVVFEKPLMKLTFVDLLAATSHFGKDSLLAQGRCGPVYRAVLPGDIHVAIKVLENARDVHHHEAVALFVDISQLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLQELPTGETNVEDWSGDTWDIIHNGAVSRASPPEKMGWLIRHRIAVGVARGLAFLHHAGSRPVVHGHLVTSNVLLGDDFEPRIADFGFRKLGRESAAANCSTETDVYCFGVVLMELLTGKAGTAETVVWVRKAVREGHAVRTLDERLKLGGDSESEMVESLRVAYLCTAESPGKRPTMQQVLGLLKDIHPSHGLD* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2560 740 Gene3D Phosphorylase Kinase; domain 1 421 536 - -
Gso11g2560 740 SUPERFAMILY L domain-like 109 296 - -
Gso11g2560 740 SUPERFAMILY Protein kinase-like (PK-like) 440 730 IPR011009 -
Gso11g2560 740 Gene3D Ribonuclease Inhibitor 83 181 IPR032675 -
Gso11g2560 740 Gene3D Ribonuclease Inhibitor 182 312 IPR032675 -
Gso11g2560 740 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 62 740 - -
Gso11g2560 740 PRINTS Leucine-rich repeat signature 212 225 - -
Gso11g2560 740 PRINTS Leucine-rich repeat signature 256 269 - -
Gso11g2560 740 MobiDBLite consensus disorder prediction 323 361 - -
Gso11g2560 740 ProSiteProfiles Protein kinase domain profile. 461 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2560 740 Gene3D Transferase(Phosphotransferase) domain 1 561 738 - -
Gso11g2560 740 MobiDBLite consensus disorder prediction 341 361 - -
Gso11g2560 740 ProSiteProfiles Leucine-rich repeat profile. 211 233 IPR001611 GO:0005515
Gso11g2560 740 PANTHER KINASE, PUTATIVE-RELATED 62 740 - -
Gso11g2560 740 Pfam Leucine Rich Repeat 211 232 IPR001611 GO:0005515
Gso11g2560 740 Pfam Leucine Rich Repeat 138 157 IPR001611 GO:0005515
Gso11g2560 740 SMART LRR_typ_2 136 159 IPR003591 -
Gso11g2560 740 SMART LRR_typ_2 256 279 IPR003591 -
Gso11g2560 740 SMART LRR_typ_2 209 231 IPR003591 -
Gso11g2560 740 Pfam Protein tyrosine and serine/threonine kinase 465 636 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2560 Gso-Chr11 41653213 41656389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2560 113 733 Receptor kinase-like Gene Family AT5G07280 30.468 1.94e-74 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Gso11g2560 PK_Tyr_Ser-Thr 8.5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2560 - - gmx:100807390 1424.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0717 15 6455733 6458909 Gso11g2560 11 41653213 41656389 GST
Gso5g1356 5 37043251 37046498 Gso11g2560 11 41653213 41656389 PCT
Gso8g0978 8 9030850 9036130 Gso11g2560 11 41653213 41656389 PCT
Gso11g2560 11 41653213 41656389 Gso5g1356 5 37043251 37046498 PCT
Gso11g2560 11 41653213 41656389 Gso8g0978 8 9030850 9036130 PCT