Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2558 ATGGCTGAGGATAAGGAGATGTCTTCCTCTGTCACCAATGGCGATGATTCTCTCACTGGCCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCCAAACAGACTATTAGTTACATGGCTGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGGCAAAATGTTTGGAAACTGGGGAAGCAGTGGCCATTAAAAAGGTTTTACAAGACAGAAGATACAAGAATCGTGAACTACAGTTAATGCGTGTTTTGGATCATCCAAATGTCATCTCTCTGAAGCATTGTTTCTTTTCAACTACAAGTACAGATGAGCTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAGTCCATGTATAGAGTCATTAAGCACTATACCAATGCTAATCAAAGAATGCCAATCATCTATGTAAAACTTTACATGTACCAGATTTTCAGGGGATTGGCTTATATCCACACTGTTCCCAAAGTTTGCCACAGAGACTTGAAGCCTCAAAATATACTGGTGGATCCTCTTACACACCAAGTGAAGCTATGTGATTTTGGAAGTGCAAAAGTTCTAGTAAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGTGCTCCAGAACTTATATTTGGCGCCACAGAGTATACAAGTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTTCTTTTGGGCCAGCCATTATTCCCTGGCGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGGTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTTTTGCAATACTCCCCAAGTCTCCGATGCACTGCGCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAATTATCCGAAGCTTCTCCAGAGCTTGTGAACAAAGTGATACCTGACCACATGAAGCGGCAAATAGGGCTGCAATTTGTTCGTCCGGCAGGATCATGA 1143 0.4191 MAEDKEMSSSVTNGDDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVLDHPNVISLKHCFFSTTSTDELFLNLVMEYVPESMYRVIKHYTNANQRMPIIYVKLYMYQIFRGLAYIHTVPKVCHRDLKPQNILVDPLTHQVKLCDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTSSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPPLFNFKQELSEASPELVNKVIPDHMKRQIGLQFVRPAGS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2558 380 SMART serkin_6 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2558 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Gso11g2558 380 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524
Gso11g2558 380 ProSiteProfiles Protein kinase domain profile. 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2558 380 Gene3D Transferase(Phosphotransferase) domain 1 120 367 - -
Gso11g2558 380 CDD STKc_GSK3 35 327 IPR039192 -
Gso11g2558 380 PANTHER BNAANNG31110D PROTEIN 1 374 - -
Gso11g2558 380 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 374 - -
Gso11g2558 380 Gene3D Phosphorylase Kinase; domain 1 25 119 - -
Gso11g2558 380 SUPERFAMILY Protein kinase-like (PK-like) 39 353 IPR011009 -
Gso11g2558 380 Pfam Protein kinase domain 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2558 Gso-Chr11 41636509 41640871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2558 44 340 MAP Kinase Gene Family AT3G59790 34.740 1.21e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gso11g2558 Pkinase 8.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2558 K14502 - gmx:100810085 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1357 5 37051018 37055329 Gso11g2558 11 41636509 41640871 PCT
Gso8g0980 8 9051102 9055612 Gso11g2558 11 41636509 41640871 PCT