Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2557 ATGGAAGATGTCAAAGTTGTTGCTTGGCTCATTTCACTTTTTCTGTGGAATTGGGTGCTTGTTGTTGATGGCACTGATAGCCTTCTCTCTCCAAAGGGTGTCAACTATGAAGTGGCCGCTTTGATGTCCATGAAGAGTAAAATGAATGATGAGTTGCATGTCATGGATGGTTGGGATATTAATTCGGTTGATCCTTGTACTTGGAACATGGTTGGTTGCTCTGCCGAAGGTTATGTTATTTCCCTGGAAATGGCCAGTGCGGGTTTATCTGGAACGATTTCCTCAGGAATTGGAAATTTGAGCCATCTCAAAACATTGTTATTGCAGAACAATCAGTTATCTGGTCCTATCCCGACTGAGATAGGGAGGTTGTTAGAGCTTCAAACCCTTGACCTTTCTGGTAACCAGCTTGATGGAGAAATTCCTAATTCTTTGGGCTTTTTGACTCATCTTAGTTACTTGCGGCTCAGCAAAAATAAACTATCTGGACAGATTCCTCAGCTTGTTGCTAATCTCACAGGCCTTTCATTCTTGGATTTGTCATTCAATAATCTCAGTGGTCCCACTCCAAAAATTTTAGCAAAAGGTTATAGTATTTCAGGAAACAATTTCCTCTGCACCTCTTCCTCACAAATTTGTATGGGCTTTTCAAAACCAGTAAATGATACAGGGTCATCTCAGACGAGTGGCAGTCATCACCAAAGGGTGCTTGCTGTTGTTATTGGCTTTAGTTGCGCATTTGTAATTTCATTGGTGCTTCTTGTCTTTTGGTTGCATTGGTACAGATCACACATCCTCTACACATCTTATGTGGAGCAAGATTGTGAATTTGATATTGGCCATTTGAAGAGGTTCTCCTTCCGGGAATTGCAAATTGCTACTGGAAATTTCAATTCAAAAAATATCCTAGGACAAGGTGGTTTTGGTGTTGTCTACAAAGGATGCCTTGCAAACAAAATGTTGGTGGCAGTAAAGAGGCTGAAAGATCCCAATTACACTGGAGAAGTGCAGTTTCAAACGGAAGTTGAGATGATTGGCTTGGCTGTGCATCGGAACCTCTTGCGTCTTTATGGATTCTGTATGACACCAGATGAAAGGTTACTTGTTTATCCTTACATGCCCAACGGCAGTGTTGCTGATCGCTTGAGAGAGACTTGCCGTGAAAGGCCATCGTTGGACTGGAACAGGAGGATGCGTGTTGCTCTTGGGGCTGCGCGTGGGCTCCTATATTTGCATGAACAATGCAATCCAAAAATAATCCACAGGGATGTTAAGGCTGCAAACATTTTGTTAGATGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACATGTAACTACTGCAGTGCGGGGTACTGTAGGGCACATTGCCCCAGAATATCTCTCAACTGGACAGTCTTCTGAAAAAACAGATGTTTTTGGATTTGGCATATTACTTTTGGAGCTCATAACAGGACACAGGGCACTGGATGCTGGAAATGCTCAGGTCCAAAAGGGAATGATCCTTGATTGGGTTAGAACCTTATTTGAGGAGAAGCGGCTGGAAGTGCTAGTCGATAGGGATCTTAGGGGATGTTTTGATCCAGTAGAGTTGGAGAAAGCAGTGGAGTTGTCTTTACAATGTGCTCAGTCGCTTCCCACTTTGCGGCCAAAGATGTCAGAAGCTTTAAAGATTCTAGAAGGTCTGGTAGGGCAGTCAGTGAGGCCAGAGGAGTCACAAGGGGGAACTAACCTATATGATGAAAGAACTTGCAGTTTCTCACAAAATTATAGTGATGTTCATGAAGAACCTTCCTTTATTATTGAAGCCATTGAGCTTTCTGGACCTCGGTGA 1863 0.4294 MEDVKVVAWLISLFLWNWVLVVDGTDSLLSPKGVNYEVAALMSMKSKMNDELHVMDGWDINSVDPCTWNMVGCSAEGYVISLEMASAGLSGTISSGIGNLSHLKTLLLQNNQLSGPIPTEIGRLLELQTLDLSGNQLDGEIPNSLGFLTHLSYLRLSKNKLSGQIPQLVANLTGLSFLDLSFNNLSGPTPKILAKGYSISGNNFLCTSSSQICMGFSKPVNDTGSSQTSGSHHQRVLAVVIGFSCAFVISLVLLVFWLHWYRSHILYTSYVEQDCEFDIGHLKRFSFRELQIATGNFNSKNILGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRETCRERPSLDWNRRMRVALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHRALDAGNAQVQKGMILDWVRTLFEEKRLEVLVDRDLRGCFDPVELEKAVELSLQCAQSLPTLRPKMSEALKILEGLVGQSVRPEESQGGTNLYDERTCSFSQNYSDVHEEPSFIIEAIELSGPR* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2557 620 SUPERFAMILY Protein kinase-like (PK-like) 281 582 IPR011009 -
Gso11g2557 620 SMART serkin_6 297 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2557 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Gso11g2557 620 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Gso11g2557 620 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 620 - -
Gso11g2557 620 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Gso11g2557 620 Pfam Protein kinase domain 298 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2557 620 Gene3D Ribonuclease Inhibitor 34 214 IPR032675 -
Gso11g2557 620 Gene3D Phosphorylase Kinase; domain 1 267 372 - -
Gso11g2557 620 ProSiteProfiles Protein kinase domain profile. 297 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2557 620 SUPERFAMILY L domain-like 36 206 - -
Gso11g2557 620 ProSiteProfiles Leucine-rich repeat profile. 126 149 IPR001611 GO:0005515
Gso11g2557 620 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 620 - -
Gso11g2557 620 Gene3D Transferase(Phosphotransferase) domain 1 373 578 - -
Gso11g2557 620 PRINTS Leucine-rich repeat signature 127 140 - -
Gso11g2557 620 PRINTS Leucine-rich repeat signature 172 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2557 Gso-Chr11 41629763 41634171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2557 42 620 Receptor kinase-like Gene Family AT5G45780 72.117 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gso11g2557 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2557 - - gmx:100810610 1236.48