Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2556 ATGGATCAAAACAGAAGCGAGGGAAGAGGTGAGGTATTGGGTCCGGTTCATGAAGGAGTTGTTGTTGTCATTGATGCAGTAGATGGGAGCAGCTTGGGTGGAAGAGTTAGTATAAGTGGAGAAGCTGGAACTTCAGGAGAGGTTGGCAAGGATTTGGGATCTGATAAGGAGCTAAAGGAGGTGCTTGAGGAAGTTAAGGGTAAGGACAAGCATGATCAAGAAAATATCAGTGATAATAAATTGCTTGGTGTTGATCAGGGAACTAGTTATAATTCAAACCATTTGGTTAATCAGGTAGTGATTGAAACTGTGGTTGTAATTGAGTCTGTTCAGACTGAGTATGTCAATGGAGATAATAGGAAATTGGAAGCAAAAGTTGATGAATCAGGGTTGAGCTTGGTATCCATGAAAGCACCAGAAGGGGTGTCTGAAACTGATAAAGATTCATGTGTGATTGATATAAAGAGCGGCAGCTGCAAAAAGGTTTATGAGAATTCCGAAGGTGAAAGGGTTTGCAGGATTTGCCATCTGACTTCCGTGCAATCGTTGGATGAAACAACTGTTGGCACTGCTAGTAGTGCTAAAAGTGCAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCACATGCTCATTGTGCTGAGGCGTGGTTCAAGCTTAAGGGAAACAGGTCATGTGAAATATGTGGTGAGACTGCAGAAAATGTTTTTGGTGTTACTAATCATGGATTTATGGAAAAGTGGAATGAAAGAAGATTCATGGACGACGATGGCAACTCATCCCACAGGTTTGGCGGATGCTGGCGAGGACAACCATTTTGTAACTTCTTGATGGCATGCCTTGTAATAGCATTTGTTCTGCCATGGTTTTTCCGTGTAAATATGTTCTAG 903 0.4208 MDQNRSEGRGEVLGPVHEGVVVVIDAVDGSSLGGRVSISGEAGTSGEVGKDLGSDKELKEVLEEVKGKDKHDQENISDNKLLGVDQGTSYNSNHLVNQVVIETVVVIESVQTEYVNGDNRKLEAKVDESGLSLVSMKAPEGVSETDKDSCVIDIKSGSCKKVYENSEGERVCRICHLTSVQSLDETTVGTASSAKSADLIQLGCACKDELGIAHAHCAEAWFKLKGNRSCEICGETAENVFGVTNHGFMEKWNERRFMDDDGNSSHRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2556 300 Pfam RING-variant domain 172 233 IPR011016 GO:0008270
Gso11g2556 300 ProSiteProfiles Zinc finger RING-CH-type profile. 164 240 IPR011016 GO:0008270
Gso11g2556 300 PANTHER ZINC FINGER, RING-CH-TYPE 1 300 - -
Gso11g2556 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 242 IPR013083 -
Gso11g2556 300 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 300 - -
Gso11g2556 300 SUPERFAMILY RING/U-box 166 236 - -
Gso11g2556 300 SMART ringv_2 171 234 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2556 Gso-Chr11 41619730 41623464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2556 152 299 C3H Transcription Factor Family AT5G05830 42.308 3.31e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2556 - - gmx:102668208 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0720 15 6491928 6495608 Gso11g2556 11 41619730 41623464 GST
Gso5g1358 5 37063171 37066408 Gso11g2556 11 41619730 41623464 PCT
Gso8g0981 8 9061808 9065921 Gso11g2556 11 41619730 41623464 PCT
Gso11g2556 11 41619730 41623464 Gso5g1358 5 37063171 37066408 PCT
Gso11g2556 11 41619730 41623464 Gso8g0981 8 9061808 9065921 PCT