Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2549 ATGTCAAAGAAGCAAAATATGGGAGCAATGAGTGATAATGGAATAAGCCGCAGCAGAAAGAAGTCATCATCAAGAGGGCACCACAGGTTTGTAGGGGTTCGACAAAGGCCATCAGGGAGATGGGTGGCTGAGATCAAAGACTCTCTACAAAAAGTTAGGCTTTGGCTTGGAACATATGACACTGCTGAGGATGCAGCTCGAGCATATGATAATGCTGCACGAGCCTTGAGAGGTTCCAATGCTAGAACCAACTTTGAGTTGCCTGAGTCAGCTTCTTCTGGTGGTGCTAATAAGCGTGGTGGTTCCAAGTTTGTGCCTGAATGCACTGAACCCTTTTCTTTTGAGGATGTGAATGAGCCAGGTTCAGATGCAGAAGGCCTTCTTGGTGCACTTAAGGCAAAACTGCTTGATGGAAAGAAAGGGAAGTTTGATCAGTTTCAATTTCTTGGAAATTCTGCTGCTCAAGTTGTTCAATCTGGCATGGTTTCAAGATCAAGTCAGAATTGTTCTGGGAAGAAAGAGTTATTATTACCAATACCATCATCTTCAGCTAATGATACTGTTCTCACAAGGATGAATTATGGAACTGGAACCAGCCCTGTGCATGGTGTGATGAGTACTTTAGCTTCATCAAACACTTGTGCTAATAAGAGTGTGGTTATCCCAAATCATGATTATCATGAAGGAGCTGTAGCAAGCACAAGCAGTGGTAGAGTCAACTCTCATCAACTTTGTCAAACCCCACCTGTGGCAACATGGCCCAGTGAAGTGGCATATGATTTGCCTTGGCCTACACAATATATGAGCCAAGTTCTTCCTGATAATGGCCTTCTTGCATCTTCCAGCACTGCTGCAGCCACCTTGACTAATATATGGCCACTTTCTGGGGTAATTGAGTCTACTGTTGATATGACATGCATGGATCAGGGACCATCAAGTAGCAACAAAAGTGGCCAAATGATGAATATGGTGAGCATGCAGTTGCCTCTAGTTGGTGGTGCAAATGAAGGTCTTTGGACATTGGAGCAGCAACAGTTTGTGCAATGTGACCAGAACAACAGCTGGTTTAGTTTTAATGGATCTTGGGATCCTCTCCTCTATGTTCCCTCTGAGCTAGCTTGA 1122 0.4421 MSKKQNMGAMSDNGISRSRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTYDTAEDAARAYDNAARALRGSNARTNFELPESASSGGANKRGGSKFVPECTEPFSFEDVNEPGSDAEGLLGALKAKLLDGKKGKFDQFQFLGNSAAQVVQSGMVSRSSQNCSGKKELLLPIPSSSANDTVLTRMNYGTGTSPVHGVMSTLASSNTCANKSVVIPNHDYHEGAVASTSSGRVNSHQLCQTPPVATWPSEVAYDLPWPTQYMSQVLPDNGLLASSSTAAATLTNIWPLSGVIESTVDMTCMDQGPSSSNKSGQMMNMVSMQLPLVGGANEGLWTLEQQQFVQCDQNNSWFSFNGSWDPLLYVPSELA* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2549 373 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Gso11g2549 373 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Gso11g2549 373 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Gso11g2549 373 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 6 368 - -
Gso11g2549 373 SUPERFAMILY DNA-binding domain 30 86 IPR016177 GO:0003677
Gso11g2549 373 CDD AP2 29 86 IPR001471 GO:0003700|GO:0006355
Gso11g2549 373 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Gso11g2549 373 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Gso11g2549 373 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 368 - -
Gso11g2549 373 MobiDBLite consensus disorder prediction 1 17 - -
Gso11g2549 373 MobiDBLite consensus disorder prediction 1 33 - -
Gso11g2549 373 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2549 Gso-Chr11 41537358 41538604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2549 10 85 AP2-EREBP Transcription Factor Family AT5G19790 62.338 1.18e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g2549 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2549 - - gmx:102667106 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0727 15 6545303 6546531 Gso11g2549 11 41537358 41538604 GST