Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2546 ATGAGATGGTCCTTGATTGTTGGGAGACTTCCAGGAAGAACTCCAAATGATGTGAAAAACTACTGGAACACCTACATTCGAAGGAAGGTATCATCATCTCACAAGGTGGTGATCAATGAAAAGCAAGAGAAAACAACAGTGAAGCCTCATGTGGTGATAAAGCCTAAGGCTCGAACTTTCTCAAGACCTTCACCCTCCGGGTTGAGAGGGAGTAATGTTCTTAGAGAAGAAGGTGGTGAGAGTGGGGCCAAACACTGCTCAACTCATCATCAAGCATGTGCAGCTTCATCAGAGTGCATTAATAATTGGAGTACTGATCAGTGGTGGAAAACTATGATGCACGACAAGGGGGACAACTTAGACAACAACCAATGCTTGTTGGCCTACCAGGATGAGGTTGGGAAGCTAAAATTCATAATCCTCTTAAGTTAA 432 0.4375 MRWSLIVGRLPGRTPNDVKNYWNTYIRRKVSSSHKVVINEKQEKTTVKPHVVIKPKARTFSRPSPSGLRGSNVLREEGGESGAKHCSTHHQACAASSECINNWSTDQWWKTMMHDKGDNLDNNQCLLAYQDEVGKLKFIILLS* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2546 143 Gene3D - 1 54 - -
Gso11g2546 143 Pfam Myb-like DNA-binding domain 2 25 IPR001005 -
Gso11g2546 143 CDD SANT 2 26 IPR001005 -
Gso11g2546 143 SUPERFAMILY Homeodomain-like 2 31 IPR009057 -
Gso11g2546 143 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 30 IPR017930 -
Gso11g2546 143 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 2 95 - -
Gso11g2546 143 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 2 95 - -
Gso11g2546 143 ProSiteProfiles Myb-like domain profile. 1 26 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2546 Gso-Chr11 41521478 41526404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2546 2 61 MYB Transcription Factor Family AT1G56650 45.312 2.62e-11 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso11g2546 Myb_DNA-binding 1.6e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2546 - K16166 gmx:100802612 303.908