Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2539 ATGGCTTCAGGGGCAATTTTCTCGTCCCTCCGGCGGAGAAGGTCGCCGACGTTGGAAGCGTTTCTGGCCCCCGTTGACTTAAGCGACGTCGCTTTGGTTCAGACCCTCATCTCCGTTGCCAACGAGATTGTGTCGTGTTTTTCGAAGCGTAGTTTCTTCTTCCAGCGCAAGAACTCGCGGTCTCTGATCCGAAAAGTGGAAGTTTTTCAGTTGCTTTTGGAGTATTTGCGTGATTCCCAATCGGGTTCTTCGTGTCTTCCACCCACGGCGGTGCTTTGTCTCAAGGAGCTCTACCTCTTGCTCTACCGCTCCAAGATTCTCCTCGATTACTGCGCCCAATCGAGTAAGTTGTGGCTCTTGCTTCAGAACCATTCCATCTCTGGTCACTTCCATGATTTGAACCAGGAGATTTCTACCCTTATGGATGTTTTTCCTGTTAAGGATGTTTTGTTGAGTAAGGATGTTAGGGAACAGGTTGAGCTCTTGCAGAAACAGTCTAGAAGAGCTAAGCTTTTTATAGATATGAAGGATGATGCTCTCAGGCTTCGGTTTTTCTCCTTTCTTGATGAGTTTGAGAATGGAGGGATTCCTGATTCTGCTGAATTGGGGTCTTTCTATGTTGAGAAGCTGCAGATTGTTGATGCGGCTAGTTGTAGGACTGAAATTGAGGGCTTGGAGGAGCAGATTGTTAATCATGAAGGTGACATTGAGCCTACTATTTCTGTGCTTAATGGGTTGGTGGCTATGACTAGATATTGCAGGTTTTTGCTCTTTGGCTTTGAGGAGGATGAGCTTGGTTTTGAGAGTGGAAGTCAGAAGAAGCCTAAGAGGAGGTTGATTACTCAGGAAATTGCTGAAACGTTTTTTACTGTTCCTAAGGACTTTTGCTGTCCAATTTCGTTGGATTTGATGAGAGACCCTGTGATTATTTCCACTGGTCAAACCTATGACCGGAGTTCAATTTCGAGGTGGATGGAAGAAGGGCATACTACTTGCCCCAAAACAGGTCAAATGCTTGCTCACACTCGTCTTGTTCCAAACCGGGCTCTGAGGAATTTGATTGTGAAGTGGTGCACTGCACATGGAGTTCCTCTTGAGCCACCAGAGGTCATGGATGCGATGGGTGAAGTTTTCCCGTCGGCCTGTCCCACCAAAGCTTCCCTTGAAGCCAACAGAGCCACAGCGACGCTTCTCATTCAACAGCTCGCTGGTGGGTCTCAAGCTGGGAAGACTGTGGCTGCCCGGGAAATAAGGTTGCTTGCAAAAACTGGAAAGGAAAACCGAGCCTTCATTGCAGAAGCAGGGGCAATTCCGTATCTGAGGAATTTACTTTCATCGCGAAATGCTGTTGCTCAGGAGAATTCTGTGACTGCGCTGCTCAATTTGTCCATTTTTGACAAGAACAAAAGTAGGATTATGGACGAGGAAGGGTGTCTAGGATCGATTGTTGATGTGTTGAGATTTGGACACACCACAGAGGCAAAGGAAAATGCTGCTGCGACGTTGTTCAGTCTATCGGCCGTCCATGACTATAAGAAAATAATTGCAGATGAGATGCGAGCAGTCGAGGCCCTCGCAGGACTGTTGCAAGAGGGGACTCCAAGAGGAAAGAAGGATGCTGTGACAGCTTTGTTCAATCTTTCCACACACACTGAGAATTGTGTTAGAATGATCGAGGCCGGGGCAGTGACAGCTCTTGTTAGTGCTTTGGGGAATGAAGGAGTTTCAGAAGAAGCAGCTGGTGCACTGGCCTTGATCGTCCGGCAGCCAATTGGGGCCAAAGCAGTGGTGAATGAGGAATCAGCAGTGGCTGGATTAATTGGAATGATGCGTTGTGGAACACCGAGAGGTAAAGAGAATGCGGTTGCAGCGATGCTCGAGTTGTGCCGGAGTGGAGGTGCAGCTGCAACAGAAAGGGTTGTGAAGGCACCAGCTTTGGCCGGATTACTTCAAACCCTTCTTTTTACGGGGACAAAACGCGCAAGAAGAAAAGCAGCTTCACTTGCAAGAGTTTTTCAGAGATGTGAGCATGCAACTTTACATTATGGTGGATTAGGTGTTGGCTATGCGTTTGCTAGCAATTCAAATACAACTAGGGATACCAGCTTTGCGGGTGATGTTTCAGTACCAATGTCCATTTCTGTGTTATAG 2151 0.4751 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLISVANEIVSCFSKRSFFFQRKNSRSLIRKVEVFQLLLEYLRDSQSGSSCLPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLMDVFPVKDVLLSKDVREQVELLQKQSRRAKLFIDMKDDALRLRFFSFLDEFENGGIPDSAELGSFYVEKLQIVDAASCRTEIEGLEEQIVNHEGDIEPTISVLNGLVAMTRYCRFLLFGFEEDELGFESGSQKKPKRRLITQEIAETFFTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMEEGHTTCPKTGQMLAHTRLVPNRALRNLIVKWCTAHGVPLEPPEVMDAMGEVFPSACPTKASLEANRATATLLIQQLAGGSQAGKTVAAREIRLLAKTGKENRAFIAEAGAIPYLRNLLSSRNAVAQENSVTALLNLSIFDKNKSRIMDEEGCLGSIVDVLRFGHTTEAKENAAATLFSLSAVHDYKKIIADEMRAVEALAGLLQEGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVSALGNEGVSEEAAGALALIVRQPIGAKAVVNEESAVAGLIGMMRCGTPRGKENAVAAMLELCRSGGAAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHATLHYGGLGVGYAFASNSNTTRDTSFAGDVSVPMSISVL* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2539 716 SUPERFAMILY RING/U-box 279 364 - -
Gso11g2539 716 ProSiteProfiles U-box domain profile. 290 364 IPR003613 GO:0004842|GO:0016567
Gso11g2539 716 Gene3D - 521 676 IPR011989 -
Gso11g2539 716 Coils Coil 215 235 - -
Gso11g2539 716 CDD RING-Ubox_PUB 295 337 IPR045210 -
Gso11g2539 716 PANTHER U BOX DOMAIN-CONTAINING 12 698 - -
Gso11g2539 716 Pfam Armadillo/beta-catenin-like repeat 425 463 IPR000225 GO:0005515
Gso11g2539 716 SMART Ubox_2 294 357 IPR003613 GO:0004842|GO:0016567
Gso11g2539 716 Gene3D - 394 520 IPR011989 -
Gso11g2539 716 Gene3D - 27 147 IPR036537 GO:0007166
Gso11g2539 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Gso11g2539 716 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 698 - -
Gso11g2539 716 SMART arm_5 509 549 IPR000225 GO:0005515
Gso11g2539 716 SMART arm_5 424 464 IPR000225 GO:0005515
Gso11g2539 716 SMART arm_5 550 588 IPR000225 GO:0005515
Gso11g2539 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 364 IPR013083 -
Gso11g2539 716 SUPERFAMILY ARM repeat 397 672 IPR016024 -
Gso11g2539 716 Pfam U-box domain 291 361 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2539 Gso-Chr11 41442083 41444966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2539 1 715 U-box Gene Family AT1G29340 69.959 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2539 - - gmx:100811153 1349.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0732 15 6613907 6616734 Gso11g2539 11 41442083 41444966 GST
Gso5g1377 5 37241987 37244724 Gso11g2539 11 41442083 41444966 PCT
Gso8g0998 8 9245373 9248053 Gso11g2539 11 41442083 41444966 PCT
Gso11g2539 11 41442083 41444966 Gso5g1377 5 37241987 37244724 PCT
Gso11g2539 11 41442083 41444966 Gso8g0998 8 9245373 9248053 PCT