Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2538 ATGAAGTGGGGAGGAAGAAAACACTCTTCAGCTTCTTCTTCTTCTTCTAGCTCTTCTTTTATTTCTCATGCATCTCCTTTCTCTTGGTTGTCAAAGTTCAAGCACATGAGAATCAATTCAGAAAGTGCTGGAAAAACGAAGCACAAGGCAAAGCAGAGTGGTTCACCACAGTATTCTTGTGAGTATGGAGAAGATAAATATTGTGTAAAGGATGATGATGGTGCTTTCTGTAGACAATTACCATTTAATGAAGAGAGTTATGAGGATAAGAAGAATAAAGATATTGATGATAATGTTAAAGTCATTTCCTGCTCAACCACAAGTTGCCTTGGTGTTAGAAGGGATGCTAAGAAACATGGAAAGAGAGAAGGCACACTCAAGTTAAAGGAGAAGGATAATATTGGTCTTGGAGAAGAAAGAAAGTTGCTGAATGATGGGAAGGTTTCAAAGGAGATGGATGAGTACAATAGAGAAAAGGAATATGAAAACTTAAGGAGAAGATTTGAGAGGAAAGCACAAAAGGCTTTTCAAGAGCAACTCTTGACATTAGGAAGAGAAGTGGAGGAAGTTGAGTTTGGATCCAGTAAAACAGTGGAAAAAGAAGATGTGTTGCAATATGAATCACCTAGAACAATTTGCACCCCAAGAACACATGCTTTTTCCACTTCATCAGTTTCAAAGAATCCTATCCTTGGAAATATTACAGAAGAGATTGAGAAAACTGAGAGGCTGTCTCCCAAGAAAATGAGTTCTGAGAGGCAGAACTTGAAACAATCTGAGGAGTTGAAGAGGCAGAAGCAACCACATCATCTTCCTCCCAGCAGAGAACTTCAAAGGAGGAAACAAAAGCCAAGCTCTAGGGTCAAAATACATTCTCCAAGGATGGTTTCCAAGGTTGAAATCTGCAAAATAAAGGCTCTAGAAGACATGAAGAAAGCAAAACTAAAGACAAAGAAAAAAAGGGAGGAAACTGTGGAGGAAACACCAGGATTAGAGAGCTTTGCTGTGATCAAGTCCTCATTGGATCCAAAGCAAGATTTCAGAGATTCAATGATTGAGATGATCATTGAGAATCAGATTAGCAAGCCAGAAGAAATGGAAGATCTGTTGGCATGTTATCTGACTTTGAATGCAGATGAGTATCATGATCTCATCATCAAAGTGTTCCGGCAGGTATGGTCTGACATGACCCGAGGTGGTTTGGGTATTAAACTAAACTTGCAATGGAGTTACTATGAATAA 1242 0.3889 MKWGGRKHSSASSSSSSSSFISHASPFSWLSKFKHMRINSESAGKTKHKAKQSGSPQYSCEYGEDKYCVKDDDGAFCRQLPFNEESYEDKKNKDIDDNVKVISCSTTSCLGVRRDAKKHGKREGTLKLKEKDNIGLGEERKLLNDGKVSKEMDEYNREKEYENLRRRFERKAQKAFQEQLLTLGREVEEVEFGSSKTVEKEDVLQYESPRTICTPRTHAFSTSSVSKNPILGNITEEIEKTERLSPKKMSSERQNLKQSEELKRQKQPHHLPPSRELQRRKQKPSSRVKIHSPRMVSKVEICKIKALEDMKKAKLKTKKKREETVEETPGLESFAVIKSSLDPKQDFRDSMIEMIIENQISKPEEMEDLLACYLTLNADEYHDLIIKVFRQVWSDMTRGGLGIKLNLQWSYYE* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2538 413 MobiDBLite consensus disorder prediction 220 292 - -
Gso11g2538 413 Coils Coil 158 178 - -
Gso11g2538 413 PANTHER TRANSCRIPTION REPRESSOR OFP4 10 406 - -
Gso11g2538 413 Coils Coil 307 327 - -
Gso11g2538 413 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 335 396 IPR006458 -
Gso11g2538 413 MobiDBLite consensus disorder prediction 7 22 - -
Gso11g2538 413 MobiDBLite consensus disorder prediction 236 283 - -
Gso11g2538 413 MobiDBLite consensus disorder prediction 1 22 - -
Gso11g2538 413 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 10 406 IPR038933 GO:0045892
Gso11g2538 413 MobiDBLite consensus disorder prediction 40 59 - -
Gso11g2538 413 Pfam Transcriptional repressor, ovate 340 396 IPR006458 -
Gso11g2538 413 ProSiteProfiles OVATE domain profile. 336 395 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2538 Gso-Chr11 41433215 41434456 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Gso11g2538 Ovate 5.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2538 - - gmx:102666239 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0733 15 6619108 6626728 Gso11g2538 11 41433215 41434456 GST
Gso5g1378 5 37252230 37253731 Gso11g2538 11 41433215 41434456 PCT
Gso8g0999 8 9254450 9256269 Gso11g2538 11 41433215 41434456 PCT
Gso11g2538 11 41433215 41434456 Gso5g1378 5 37252230 37253731 PCT
Gso11g2538 11 41433215 41434456 Gso8g0999 8 9254450 9256269 PCT