Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2537 ATGATGGAGGAAGCTCAGGGCAGTTCTAGTTCCCTGCCACCTTTCCTCACCAAGATTTATGAGATGGTGGATGATCCTTCAACTAATTCCATTGTTTCATGGAGTGCCACCAATAGGAGTTTCATTGTTTGGAACCCACCAGAGTTTTCAAGGGATTTGTTACCCAAATACTTTAAGCACAACAACTTTTCCAGTTTCATCAGGCAGCTCAACACTTACGGCTTTAGAAAGATTGATCCTGAACAATGGGAATTTGCAAATGATGATTTTGTAAGAGGTCAGCCACATCTTTTGAAGAACATCCATAGGCGCAAACCTGTCCATAGCCATTCTTTGCAGAATATCCAGGGTCAAGGGGTTTCTTCGCTGACTGAATCAGAAAGGCAGAGTTTTAAGGATGAGATAGAGAAGCTTAAACATGAAAAAGAACAACTTCTTCGGGAGTTAGAGATGCATGAACAGGAGTGGAAAATGTATGAGGTACAATTACAACACTCCAATGATCGTTTGGAAAAGTTGGAAAAGAAGCAAGAAAATTTGGTTTCTTCTGTCTCTCAAGTGTTGCAGAAACCTGGGATTGCCTTAAATCTCTTGCTGTTGACAGAAAACATGGATAGAAAACGGAGGTTGCCAAGAAGTGGTCTCTTTAGTGATGACGCTAGCATTGAAGATCATATGGAAACTTCCCAAGTATTACCAAGGGAAAATGCAGATGGTGCTTCTATTTTCTCATCGAGCACAGAACGGTTGGATCTCCTTGAGTCATCCATGACGTTTTGGGAGAATATTACACATGATGTTGGTGACGTCTTTGTTCAAAGTCATTTAAACTTGGATTTTGATGAATCTACAAGTTGTGCAGATAGTCCAGCTATATCTTGTGTGCAACTAGAAGTTGAAGATCAGCCTAAGTCACATGGAATCAACGTGAGTTCTGAGCCAGCTGTAGTTGCGGCTCCTGATCTTGATGCATCAAAAGAACAACCTGTCGAAACAGCTCCTCTGACTACTGGTGTTAATGACATATTCTGGGAACGATTCTTGACAGAGAATCCTGGTTCGTCAGAAATGCAGGAAGCTCAGTCTGAAAGAGAGGATTCTGATGGCAGAAGTAATGCCAAATTTTGGTGGAACATTAGGAATGTAAATAACCCTCCAGAACAGATGGGGCATTCTTAG 1179 0.4148 MMEEAQGSSSSLPPFLTKIYEMVDDPSTNSIVSWSATNRSFIVWNPPEFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGQPHLLKNIHRRKPVHSHSLQNIQGQGVSSLTESERQSFKDEIEKLKHEKEQLLRELEMHEQEWKMYEVQLQHSNDRLEKLEKKQENLVSSVSQVLQKPGIALNLLLLTENMDRKRRLPRSGLFSDDASIEDHMETSQVLPRENADGASIFSSSTERLDLLESSMTFWENITHDVGDVFVQSHLNLDFDESTSCADSPAISCVQLEVEDQPKSHGINVSSEPAVVAAPDLDASKEQPVETAPLTTGVNDIFWERFLTENPGSSEMQEAQSEREDSDGRSNAKFWWNIRNVNNPPEQMGHS* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2537 392 Coils Coil 121 190 - -
Gso11g2537 392 SUPERFAMILY "Winged helix" DNA-binding domain 10 104 IPR036390 -
Gso11g2537 392 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g2537 392 MobiDBLite consensus disorder prediction 350 372 - -
Gso11g2537 392 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g2537 392 Gene3D - 7 105 IPR036388 -
Gso11g2537 392 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 2 373 - -
Gso11g2537 392 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g2537 392 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g2537 392 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g2537 392 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 373 IPR027725 -
Gso11g2537 392 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2537 Gso-Chr11 41426326 41428467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2537 8 391 HSF AT4G18880 52.393 4.94e-125 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso11g2537 HSF_DNA-bind 1.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2537 K09419 - gmx:100820566 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0734 15 6633235 6635295 Gso11g2537 11 41426326 41428467 GST
Gso5g1379 5 37261899 37264223 Gso11g2537 11 41426326 41428467 PCT
Gso8g1000 8 9260817 9263042 Gso11g2537 11 41426326 41428467 PCT
Gso11g2537 11 41426326 41428467 Gso5g1379 5 37261899 37264223 PCT
Gso11g2537 11 41426326 41428467 Gso8g1000 8 9260817 9263042 PCT