Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2530 ATGTCTGTGGTGGCTGATAATTCTGCAAACAATGGAAGCCACCAAGTGGTTTTAAATGTAAACGGTGATGCCCCCAAGAAGTGTGATGACTCAGCCAACCAAGACTGTGTACCTCTTCTGCAGAAGTTGGTAGCAGAGGTGGTGGGGACGTACTTCTTGATATTTGCAGGGTGTGCTTCGGTGGTGGTGAACCTTGACAAGGACAAAGTGGTAACACAACCTGGGATTTCAATTGTTTGGGGTCTCACTGTTATGGTTTTGGTTTACTCAGTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTCACCATTGCTCATGCTACCACCAAAAGGTTTCCACTGAAGCAGGTACCAGCTTATGTGATAGCTCAGGTCGTTGGAGCCACACTTGCTAGTGGAACTCTTAGACTTATATTCAATGGCAAGAATGACCATTTTGCAGGAACACTCCCTTCCGGTTCTGATTTGCAGTCTTTTGTGGTCGAATTCATAATCACTTTTTATCTCATGTTTGTCATTTCTGGTGTTGCCACCGATAACAGAGCGATTGGTGAGCTGGCAGGGCTTGCAGTTGGGTCTACGGTGCTGCTAAATGTGATGTTTGCCGGGCCAATCACAGGAGCATCAATGAATCCAGCAAGAAGTTTAGGGCCTGCTATTGTGCACCATGAATACAGAGGAATATGGATATATTTGGTGTCACCAACTCTTGGAGCTGTGGCTGGTACATGGGCCTATAATTTCATCAGGTACACAAACAAGCCAGTGCGTGAAATCACCAAGAGTGCCTCTTTCCTCAAAGGTAGTGAAGCTGAGTGA 822 0.4623 MSVVADNSANNGSHQVVLNVNGDAPKKCDDSANQDCVPLLQKLVAEVVGTYFLIFAGCASVVVNLDKDKVVTQPGISIVWGLTVMVLVYSVGHISGAHFNPAVTIAHATTKRFPLKQVPAYVIAQVVGATLASGTLRLIFNGKNDHFAGTLPSGSDLQSFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHHEYRGIWIYLVSPTLGAVAGTWAYNFIRYTNKPVREITKSASFLKGSEAE* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2530 273 Pfam Major intrinsic protein 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g2530 273 Gene3D Glycerol uptake facilitator protein. 5 263 IPR023271 -
Gso11g2530 273 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g2530 273 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g2530 273 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g2530 273 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g2530 273 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g2530 273 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g2530 273 TIGRFAM MIP: MIP family channel proteins 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g2530 273 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g2530 273 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 5 270 - -
Gso11g2530 273 SUPERFAMILY Aquaporin-like 37 261 IPR023271 -
Gso11g2530 273 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Gso11g2530 273 PANTHER AQUAPORIN NIP2-1 5 270 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2530 Gso-Chr11 41368288 41370856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2530 28 268 Major Intrinsic Protein MIP AT5G37820 59.200 1.17e-102 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2530 K09874 - gmx:100812577 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1380 5 37282676 37287034 Gso11g2530 11 41368288 41370856 PCT
Gso8g1001 8 9280001 9283523 Gso11g2530 11 41368288 41370856 PCT
Gso11g2530 11 41368288 41370856 Gso5g1380 5 37282676 37287034 PCT
Gso11g2530 11 41368288 41370856 Gso8g1001 8 9280001 9283523 PCT