Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2517 ATGGCTTTTCCAGACCCATCCATGTCAGTTTCTCCACAGAGGAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACTACCAATCGCCAAGTCACATTCTGCAAGCGCAGGAACGGCTTGCTCAAGAAAGCATATGAATTATCTGTGCTTTGTGATGCAGAGGTTGCTCTCATTGTTTTCTCTAGCCGTGGACGCCTCTATGAATATGCTAATAACAGTGTCAAAGCAACCATCGAGAGGTACAAAAAAGCAAGTTCAGATTCGTCTGGCGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGATAAACTTCGTCAACAAATTAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGATTCTTTGGGCTCTCTGACTGCCAAGGATCTCAAAAATCTGGAGACTAAATTAGAAAAAGGAATTAGTAGGATTCGTTCAAAAAAGAACGAGCTGCTATTTGCTGAAATTGAGTACATGCAAAAGAGGGAGATAGACTTGCACAACAACAACCAGCTTCTTCGAGCAAAGATAGCTGAAAGTGAGAGGAACCACCATAACATGGCTGTGTTGCCTGGAGGCTCAAACTATGACTCTATGCAGTCTTCTCAGCAACAATTTGACTCTCGTGGCTACTTCCAAGTCACTGGATTACAACCCAATAATCAGTATGCACGGCAAGATCAGATGTCCCTTCAATTAGTATGA 732 0.4331 MAFPDPSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKASSDSSGAGSASEANAQFYQQEADKLRQQISNLQNNNRQMMGDSLGSLTAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNHHNMAVLPGGSNYDSMQSSQQQFDSRGYFQVTGLQPNNQYARQDQMSLQLV* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2517 243 SUPERFAMILY SRF-like 17 89 IPR036879 GO:0003677|GO:0046983
Gso11g2517 243 PANTHER MADS BOX PROTEIN 10 237 - -
Gso11g2517 243 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Gso11g2517 243 CDD MADS_MEF2_like 17 86 IPR033896 GO:0000977|GO:0045944
Gso11g2517 243 Gene3D - 28 100 IPR036879 GO:0003677|GO:0046983
Gso11g2517 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Gso11g2517 243 Coils Coil 102 129 - -
Gso11g2517 243 PANTHER AGAMOUSB 10 237 - -
Gso11g2517 243 Coils Coil 139 159 - -
Gso11g2517 243 Pfam K-box region 99 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso11g2517 243 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Gso11g2517 243 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Gso11g2517 243 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Gso11g2517 243 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Gso11g2517 243 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Gso11g2517 243 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2517 Gso-Chr11 41214562 41224220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2517 14 243 MADS-box Gene Family AT3G58780 67.234 4.60e-108 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso11g2517 K-box 4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2517 K09264 - gmx:732595 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0753 15 6812356 6822556 Gso11g2517 11 41214562 41224220 GST
Gso5g1388 5 37347983 37356151 Gso11g2517 11 41214562 41224220 PCT
Gso8g1004 8 9325812 9333264 Gso11g2517 11 41214562 41224220 PCT
Gso11g2517 11 41214562 41224220 Gso5g1388 5 37347983 37356151 PCT
Gso11g2517 11 41214562 41224220 Gso8g1004 8 9325812 9333264 PCT