Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2506 ATGGCACAAGATGAAGAAGCTGCCAAGGTCAAAGTCGAAGAAAAGGTTCCATTTTACAAGCTTTTCACCTTTGCAGACCACCTTGACATGACTATGATGATCATTGGTGTCATCAGTGCCATGGCTAATGGGATGTCGCAACCTCTCATGTCCCTCATTTTTGGGAAGATGATCAACGCATTTGGCTCCACTGATCCCTCCCACATTGTCCAGGAAGTTTCTAAGGTTGCATTGTTATTTGTTTACGTGGCTTTTGGGGCTGGAATTACCTCTTTTCTACAGGTATCATGTTGGATGATGACAGGAGAAAGACAAGCAGCAAGGATCCGTGGCTTGTACTTGAAAACTATATTGAAGCAGGACATTACCTTCTTTGACACTGAAACAACAACTGGTGAGGTAATTGGGAGAATGTCTGGTGACACCATTCTCATTCAAGATGCCATGGGAGAAAAGGTTGGGAAGTTTATACAACTTGTTTCAGCATTTTTTGGTGGCTTTGTCATAGCCTTTACAAAAGGATGGGAACTCTGTCTAGTTTTGCTTGCATGCATTCCTTGCATTGTTGTTGTTGGTGGAATCATGTCCATGATGATGGCAAAAATGTCAACTCGCGGGCAAGCTGCTTATGCAGAAGCTGGAATTGTTGTAGAACAAACAGTTGGAGCCATTAGAACAGTTGCCTCTTTTACTGGTGAGAAAAAAGCAATAGAGAAATATAATAACAAGTTAAGAATTGCTTATGCTACAACTGTTCAACAAGGGTTGGCCTCAGGGTTTGGAATGGGAGTACTCTTGTTGATTATTTTTTGCACCTATGCACTTGCCATGTGGTATGGTTCCAAACTGATCATTGAGAAAGGCTATGATGGTGGAAGTGTCTTCAACATTATCATGTCAATCAATACTGGTGGAATGTCACTTGGTCAGGCAGCTCCGTGCGTAAATGCATTTGCAGCAGGCCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAACGAAAGCCAAAAATTGATGCTTATGACACCAATGGTGTTGTCTTGGAAGAAATAAGGGGAGATATAGAACTCAAGGATGTTCACTTCAGATACCCTGCAAGGCCAGATGTTCAGATCTTTTCCGGATTCTCATTCTATATTCCAAGTGGAAAAACTGCTGCTTTTGTGGGTCAAAGTGGAAGCGGGAAGTCCACTATAATTAGTTTATTAGAAAGATTTTATGATCCTGAAGCTGGAGAAGTACTTATAGATGGTGTGAATTTGAAGAATTTTCAAGTTAGATGGATTAGAGAACAGATTGGGCTTGTTGGTCAAGAACCTATCCTGTTTACAGCTAGTATTAAAGAGAACATAGCATACGGGAAAGAAGGTGCAACAGATGAGGAGATAACAACAGCAATAACACTTGCTAATGCCAAAAAGTTCATTGATAAGCTGCCTCAGGGAATTGACACAATGGTTGGAGGGCATGGAACTCAACTTTCTGGTGGGCAAAAACAAAGAATAGCAATTGCAAGGGCAATTTTGAAGAACCCAAGAATCCTTCTTCTTGATGAAGCTACTAGTGCATTGGATGCTGAGTCTGAACGTATTGTCCAAGAAGCATTAGAAAAAGTTATGTCACAAAGGACTACTGTAGTTGTTGCACATCGTTTAACAACTATTAGAAATGCTGACATAATAGCAGTGATTCATCAGGGAAAAATTGTAGAAAAAGGAACTCATGATGAATTGATCAAGGATGCTGATGGTTCTTATTCTCAGCTTATTCGTTTACAAGAAGGAAATAAAGGAGCAGATGTGAGCCGAAAATCAGAAGCAGATAAGTCAAATAACAACAGCTTCAACTTAGATAGTCACATGGCTAGATCTTTAACTAAGAGAACATCCTTTGCAAGATCAATAAGTCAAGGCTCAACAAGCAGTAGACACTCTCTCTCACTTGGCTTAGCTCTTCCTTATCAAATTCCTTTGCATAAGTCTGGAGAAGGAGATAATGAGGATGTTGAAAGTAGTGAAGTTGATAATAAGAAGAACCAAAAGGTTCCCATTAACCGTTTGGCCAAGCTGAACAAGCCAGAGGTTCCTGTCTTATTACTAGGATCCATTGCTGCAGCAATACATGGTGTTATTCTCCCTATATTTGGACTCTTGCTTTCATCAGCAATTAACACGTTCTATAAACCTCCAAATGAGCTCAGGAAAGATTCTGAGTTTTGGTCACTTTTATTTGTTGGTTTGGGGGTTGTCACTTTGGTGGCTATACCAGTGCAAAACTACTTATTTGGGATAGCTGGTGGAAAACTTATAGAACGAATTTGTTCGTTGACATTTAACAAGGTTGTGCACCAAGAAATCAGTTGGTTCGATCGTCCTTCAAATTCAAGTGGGGCAGTTAGTGCAAGGTTAGCTACTGGAGCTTCAACAGTGAGAAGCCTCGTGGGTGACACCTTGGCCCTCATTGTGCAAAACATAGCAACAGTCTCAGCAGGTCTAGTTATAGCATTCACTGCTAATTGGATTCTGGCTTTTGTAATTCTGGCCGTGTCACCCTTGTTGCTTATACAAGGATACCTTCAGACCAAGTTTGTAAAAGGATTCAGTGCAGATGCAAAGGTGATGTATGAGGAGGCAAGTCAGGTGGCAACTGATGCTGTTGGTAGCATTAGAACTGTTGCATCATTCTGTGCTGAGCCAAAGGTGATGGAAATGTACAGGAAGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCGGTTGGGGCTTGTTAGTGGTGCAGGATTAGGTTTCTCTTTTGTTGTTCTATACTGCACAAATGCTTTCTGTTTCTACATAGGATCTATTCTTGTGCAACATGGGAAAGCAACTTTTGGAGAGGTTTTCAAGGTTTTCTTTGCCTTAACAATTACAGCAGTTGGTGTTTCCCAGAGTAGTGCCTTGGCTCCAGATACTAACAAGGCCAAAGATTCTGCAGCCTCAATATTTGAAATTCTTGACAGCAAACCAGCTATTGACTCCAGCAGTGATGAGGGCACAACATTAGACACAGTAAAAGGTGAAATTGAACTTCAACAAGTCAGCTTTTGTTACCCAACAAGGCCTAATATTCAAATTTTCAAAGACATGTGTCTAACCATGCCAACTGGAAAGACCGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTGACTCTGGACGCATACTAATTGATGGAGTGGATATAAAAGAATTCAAACTAAACTGGCTGAGGCAGCAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGATAGCATTCGTGCCAACATAGCTTATAGCAAAGAGGGAGGTGCCACAGAGGAAGAGATAATTGCAGCAGCACAAGCAGCCAATGCACACAAGTTCATCAGTTCTCTTCCACATGGTTATGACACCTCTGTTGGAGAAAGAGGCACACAATTGTCAGGAGGACAAAAGCAGCGCATAGCCATTGCAAGAGCCATTCTGAAAGACCCAAGAATCCTTTTGCTTGATGAGGCAACTAGTGCACTTGATGCAGAATCAGAAGGTGTGGTTCAAGAGGCTCTTGATAGAGTGTCTGTGAATAGAACTACTGTCGTTATTGCTCACCGCCTCACAACAATTAAAGGTGCTGACATTATAGCAGTGGTGAAAAATGGGGCGATTGCTGAGAAGGGAGGACATGATGCGTTGATGAAGATTGATGGTGGAGTTTATGCTTCTTTGGTAGCTCTCCATACGAAGTGA 3786 0.4147 MAQDEEAAKVKVEEKVPFYKLFTFADHLDMTMMIIGVISAMANGMSQPLMSLIFGKMINAFGSTDPSHIVQEVSKVALLFVYVAFGAGITSFLQVSCWMMTGERQAARIRGLYLKTILKQDITFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLVSAFFGGFVIAFTKGWELCLVLLACIPCIVVVGGIMSMMMAKMSTRGQAAYAEAGIVVEQTVGAIRTVASFTGEKKAIEKYNNKLRIAYATTVQQGLASGFGMGVLLLIIFCTYALAMWYGSKLIIEKGYDGGSVFNIIMSINTGGMSLGQAAPCVNAFAAGQAAAYKMFETIKRKPKIDAYDTNGVVLEEIRGDIELKDVHFRYPARPDVQIFSGFSFYIPSGKTAAFVGQSGSGKSTIISLLERFYDPEAGEVLIDGVNLKNFQVRWIREQIGLVGQEPILFTASIKENIAYGKEGATDEEITTAITLANAKKFIDKLPQGIDTMVGGHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALEKVMSQRTTVVVAHRLTTIRNADIIAVIHQGKIVEKGTHDELIKDADGSYSQLIRLQEGNKGADVSRKSEADKSNNNSFNLDSHMARSLTKRTSFARSISQGSTSSRHSLSLGLALPYQIPLHKSGEGDNEDVESSEVDNKKNQKVPINRLAKLNKPEVPVLLLGSIAAAIHGVILPIFGLLLSSAINTFYKPPNELRKDSEFWSLLFVGLGVVTLVAIPVQNYLFGIAGGKLIERICSLTFNKVVHQEISWFDRPSNSSGAVSARLATGASTVRSLVGDTLALIVQNIATVSAGLVIAFTANWILAFVILAVSPLLLIQGYLQTKFVKGFSADAKVMYEEASQVATDAVGSIRTVASFCAEPKVMEMYRKKCSGPEKQGVRLGLVSGAGLGFSFVVLYCTNAFCFYIGSILVQHGKATFGEVFKVFFALTITAVGVSQSSALAPDTNKAKDSAASIFEILDSKPAIDSSSDEGTTLDTVKGEIELQQVSFCYPTRPNIQIFKDMCLTMPTGKTVALVGESGSGKSTVISLLERFYNPDSGRILIDGVDIKEFKLNWLRQQMGLVGQEPILFNDSIRANIAYSKEGGATEEEIIAAAQAANAHKFISSLPHGYDTSVGERGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEGVVQEALDRVSVNRTTVVIAHRLTTIKGADIIAVVKNGAIAEKGGHDALMKIDGGVYASLVALHTK* 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2506 1261 Gene3D - 353 606 IPR027417 -
Gso11g2506 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 355 591 IPR003439 GO:0005524
Gso11g2506 1261 SMART AAA_5 1047 1234 IPR003593 -
Gso11g2506 1261 SMART AAA_5 382 568 IPR003593 -
Gso11g2506 1261 ProSitePatterns ABC transporters family signature. 494 508 IPR017871 GO:0005524
Gso11g2506 1261 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 11 1260 IPR039421 -
Gso11g2506 1261 Pfam ABC transporter 1039 1188 IPR003439 GO:0005524
Gso11g2506 1261 Pfam ABC transporter 375 522 IPR003439 GO:0005524
Gso11g2506 1261 Gene3D ABC transporter type 1, transmembrane domain 79 994 IPR036640 GO:0005524|GO:0016021
Gso11g2506 1261 CDD ABC_MTABC3_MDL1_MDL2 1020 1256 - -
Gso11g2506 1261 SUPERFAMILY ABC transporter transmembrane region 681 1004 IPR036640 GO:0005524|GO:0016021
Gso11g2506 1261 Gene3D - 1010 1261 IPR027417 -
Gso11g2506 1261 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 316 - -
Gso11g2506 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 593 IPR027417 -
Gso11g2506 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1020 1257 IPR003439 GO:0005524
Gso11g2506 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 320 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso11g2506 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 699 985 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso11g2506 1261 SUPERFAMILY ABC transporter transmembrane region 20 339 IPR036640 GO:0005524|GO:0016021
Gso11g2506 1261 CDD ABC_MTABC3_MDL1_MDL2 355 593 - -
Gso11g2506 1261 ProSitePatterns ABC transporters family signature. 1160 1174 IPR017871 GO:0005524
Gso11g2506 1261 MobiDBLite consensus disorder prediction 595 617 - -
Gso11g2506 1261 CDD ABC_6TM_Pgp_ABCB1_D2_like 688 1003 - -
Gso11g2506 1261 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 11 1260 - -
Gso11g2506 1261 Pfam ABC transporter transmembrane region 33 303 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso11g2506 1261 Pfam ABC transporter transmembrane region 699 971 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso11g2506 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1010 1257 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2506 Gso-Chr11 41099784 41105475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2506 5 1259 Calmodulin-binding Proteins AT2G36910 44.611 0.0 1061
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2506 K05658 - gmx:100792531 2387.07