Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2500 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCCCAGGAAGGGGAAAATCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGAAGCCGCGTGGTATACTTTCCACAAGGTCACAGTGAACAGGTGGCTGTGTCGACCAACAAGGAAGTAGATGCTCATATCCCAAACTATCCAAGCTTGCCTCCTCAACTCATTTGTCAACTTCATAATATGACTATGCATGCTGATGCGGAGACTGATGAAGTGTACGCGCAAATGACCTTGCAACCTCTGAATCCTCAAGAGCAAAAGGAGGCATACCTGCCAGCGGAGCTGGGCACCCCAAGTAAACAGCCAACAAACTATTTCTGCAAAACTTTGACAGCCAGTGACACAAGCACACATGGGGGATTCTCTGTGCCTCGCAGGGCAGCTGAAAAAGTGTTTCCTCCATTGGATTTCTCTCAACAACCTCCTGCTCAAGAATTAATTGCAAGGGATTTGCATGGTAATGAGTGGAAATTCAGGCATATCTTCCGGGGCCAGCCCAAAAGGCATCTACTTACAACCGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTAGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAACTACTACTTGGCATCCGCCGTGCTAATCGACCACAAACTGTGATGCCTTCTTCGGTGTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATCTTCTATAATCCACGTGCTAGCCCTTCAGAATTTGTCATACCATTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGGTTCAGGATGCTGTTTGAAACAGAGGAGTCAAGTGTGCGGAGATACATGGGTACAATAACTGGCATTAGTGACCTGGATCCTGTCCGGTGGCAAAACTCACATTGGCGCTCCGTCAAGGTTGGCTGGGATGAATCCACTGCTGGAGACAGGCAACCTAGAGTGTCTCTTTGGGAAATTGAGCCATTAACTACATTTCCTATGTATCCATCTCCATTCCCCCTTAGGCTTAAACGGCCATGGCCTCCAGGACTGCCTTCATTCCATGCAGGCATGAAGGATGACGATTTTGGCCCGAATTCACCTCTGTTGTGGCTCCGAGATCCTGATAGAGGGCTTCCGTCTCTTAATTTTCAGGGGATTGGGATTAATCCTTGGATGCAGCCAAGATTTGATCCCACCATGTTGAATATGCAAACAGACATGTACCAAGCTGCGGCTGTTCAGGACATGAGGAGTTTAGATCCTTCCAAACAGCATTCTGCTTCCTTACTTCCATTTCAGCAACCACAGAACTTCCCAAACAGGACTGCTGCTTTAATGCAGGCCCAGATGTTGCAGCAGTCACAACCTCAGCAGATTTTTGGAAATACTCAAGAGAATCAACATTCCCCACAATCTCAGGCTCATCTTCAGCAACATCTACAACATCAACACTCGTTCAATAGTCAGCATCATCATCACCACCAGCAACAACAACAGCGACAGCAACATCAAGTGGTAGATAATCAACAGATTTCTAGTGCAGTCTCTACAATGTCTCAGTTTGTTTCAGCTCCTCAACCTCAATCACCACCTATGCAAGCTATCTCTTCCATGTGCCAACAGCAAAACTTTTCTGATTCAAACGGGAACACTGTGACTACTATTGTTTCTCCCCTGCACAGTATCTTGGGTTCTTTTCCCCAGGATGAAACATCTCACCTCCTGAACCTTCCTAGAACAAGCTCTTGGATTCCTGTTCAAAATTCAAGTGGGTGGCCCTCGAAGCGTGTTGCAGTGGATCCTCTCCTTTCTTCCGGAGCCTCTCAATGTGTTCTACCTCAGGTGGAGCAGCTAGGGCAGCCACAGAGTACCATGTCTCAAAATGCTATTTCTTTACCACCTTTTCCTGGTAGGGAGTGCTCAATAGACCAAGAAGGGAGCAATGATCCACAAAACCATCTCTTATTTGGTGTTAATATAGAGCCCTCGTCCCTTCTCATGCCTAATGGAATGTCAAGCCTTAAGGGGGTCTGTGGAAACAATGGCTCCTCAACCTTGCCATATCAATCTTCTAATTATCTGAATACTACCACACGGACTGATTCTTCATTGAATCATGGAATGACCCCCAACATAGGCGACTCGGGTTTCCTGCAGTGTCTGGAAGAGGCAGGACAAGGAAACCCACTGAACAAAACCTTTGTGAAGGTTTATAAGTCAGGGTCCTTTGGAAGGTCATTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGTGGTGAACTCGCTCGAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAACGATGTTCTTCTCCTTGGTGATGGCCCCTGGCCGGAATTCGTAAATAGCGTATGGTGCATAAAGATACTTTCTCCTCAGGAAGTGCAGCAGATGGGCAACAATGGCCTTGAGCTGTTGAACTCGTTTCCAATTCAAAGGCTCTCTAATGGCATCTGTGATGACTATGTGAGCCGTCAAGACCCAAGAAATTTAGGCACTGGGATAACAACCGTGGGGTCTTTAGACTACTAA 2691 0.4675 MRLSSAGFSPPPQEGENRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNMTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHAGMKDDDFGPNSPLLWLRDPDRGLPSLNFQGIGINPWMQPRFDPTMLNMQTDMYQAAAVQDMRSLDPSKQHSASLLPFQQPQNFPNRTAALMQAQMLQQSQPQQIFGNTQENQHSPQSQAHLQQHLQHQHSFNSQHHHHHQQQQQRQQHQVVDNQQISSAVSTMSQFVSAPQPQSPPMQAISSMCQQQNFSDSNGNTVTTIVSPLHSILGSFPQDETSHLLNLPRTSSWIPVQNSSGWPSKRVAVDPLLSSGASQCVLPQVEQLGQPQSTMSQNAISLPPFPGRECSIDQEGSNDPQNHLLFGVNIEPSSLLMPNGMSSLKGVCGNNGSSTLPYQSSNYLNTTTRTDSSLNHGMTPNIGDSGFLQCLEEAGQGNPLNKTFVKVYKSGSFGRSLDITKFSSYHELRGELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSFPIQRLSNGICDDYVSRQDPRNLGTGITTVGSLDY* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2500 896 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Gso11g2500 896 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Gso11g2500 896 Gene3D - 760 852 - -
Gso11g2500 896 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Gso11g2500 896 Gene3D - 291 363 - -
Gso11g2500 896 MobiDBLite consensus disorder prediction 493 539 - -
Gso11g2500 896 Gene3D - 125 228 IPR015300 -
Gso11g2500 896 PANTHER AUXIN RESPONSE FACTOR 1 876 - -
Gso11g2500 896 MobiDBLite consensus disorder prediction 493 515 - -
Gso11g2500 896 CDD B3_DNA 126 227 IPR003340 GO:0003677
Gso11g2500 896 ProSiteProfiles PB1 domain profile. 763 847 IPR000270 GO:0005515
Gso11g2500 896 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso11g2500 896 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 876 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso11g2500 896 Pfam AUX/IAA family 760 848 IPR033389 -
Gso11g2500 896 SUPERFAMILY CAD & PB1 domains 763 838 - -
Gso11g2500 896 SMART B3_2 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2500 Gso-Chr11 41063906 41070795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2500 1 481 B3 DNA Binding Superfamily AT1G30330 85.276 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso11g2500 AUX_IAA 2.1e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2500 - - gmx:100798719 1708.73