Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2486 ATGACTTTTGAGCCATTGGATTGGTATTGTCGCCCAGTTGCAAATGGAGTATGGACAAGATCAGTGGAGAATGCCTTTGGTGCTTACACTCCTTGTGCGGTTGACTCTCTGGTCATCTCCGTTTCTAATTTGATACTTCTCGGCCTGTGCATTTACCGCATATGGTTGATTAAGAAGGATTTCACAGTCAAGAGGTTCCATTTAAGGTCAAACCTTTACAATTATATTCTCGGATTGCTAGCTTTATATTGTGTGGCAGAACCATTATACAGATTGATATTGGGAATATCTGTTCTAAATTTAGATGGGCAGACTCAATTTGCTCCATTTGAGATAGTTTCACTGATCATTGAGGCTCTTGCTTGGTGCTCTATACTAATTTTGATTGGAATTGAAACTAAAGTCTACATCCGAGAATTTCGATGGTTTGTCAGATTTGGTTTGATTTATGCTATTGTAGGGGATGCTGTAATGTTCAATCTCATCATTTCTGTGAAGGAGTTATATAGCAGCTCTGTGCTATATTTATACATCAGTGAGGTGGTTGGCCAGGTTTTGTTTGGAATACTATTGCTTGTGTATGTTCCTACTTTGGATCCTTATCCAGGTTATACCCCCATTGGGAGTGACATGATTACTGATGCTGCATATGATGAACTCCCTGGAGGAGATATGATATGTCCTGAGAGGAATGCCAACATATTGTCAAAAATAATGTTTTCTTGGATGAATCCCATCATGAAACTAGGATATCAAAGACCACTGACAGAGAAAGATATATGGAAATTAGATACATGGGAACGGACAGAGACACTGATCAATAAGTTCCAGAAATGCTGGGTTGAGGAGTCTCGGAAGCCAAAACCTTGGCTTTTAAGAGCATTAAATGCAAGCCTTGGAGGAAGGTTTTGGTGGGGAGGCTTTTGCAAGATTGGCAATGATATTTCCCAATTTTTGGGCCCACTTATATTGAATCAGCTGTTACAGTCTATGCAAAATGGTGATCCATCCTGGACTGGCTATGCATATGCCTTCTCAATATTTGTTGGAGTGGTCTTTGGGGTGTTATGTGAAGCTCAATATTTTCAGAATGTCATGCGTGTTGGTTACCGGTTAAGATCAACATTGGTGGCTGCTGTATTTCGCAAATCTCTAAGGCTTACTCATGAAGCGCGAAAGCAGTTTGCAACTGGAAAAATAACCAACTTGATGACTACTGATGCCGAGGCTCTTCAGCAAATATGCCAGTCACTTCACACTTTGTGGTCAGCTCCATTTCGAATTGTTGTTGCTATGGTTCTTCTTTACCAACAACTTGGTGTTGCTTCCCTTCTTGGTGCTTTGATGCTAGTTCTCATGTTTCCATTACAGACATTTATCATCAGCAGAATGCAGAAGTTTTCTAAGGAAGGATTACAACGTACAGACAAAAGAATTGGTCTCATGAATGAAATTTTGGCTGCTATGGACACTGTAAAGTATTATGCATGGGAGAGTAGTTTCCAGTCTAAAGTACAGATTGTCCGAAATGATGAATTATCATGGTTTCGAAAAGCATCATTACTAGGAGCGTGTAATGCATTCATACTAAATAGCATTCCAGTTTTTGTAACTGTGATTACATTTGGAGTATTCACCTTGCTTGGAGGGGATCTGACACCTGCAAGAGCATTTACATCACTTTCTCTGTTTTCCGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATACTATAACTCAGGTGGTTAATGCAAATGTATCGTTGAAGAGACTAGAAGATTTACTCTTAGCAGAAGAGAGAATACTTCTATCAAATCCACCTCTTGAGCCAGGGTTACCAGCCATCTCGATCAAGAATGGATACTTTTCTTGGGATACGAAGGCAGAGAGGGCCACATTGTCAAACATAAATCTGGATATACCTGTTGGTTGCCTAGTTGCAGTTGTAGGCAGTACAGGAGAAGGGAAGACATCACTAGTATCTGCAATGCTTGGAGAACTTCCTCCGATGGCAGATTCAACTGTTGTTTTGAGAGGAACAGTTGCTTATGTACCCCAAGTTTCATGGATTTTTAATGCAACTGTACGGGATAACGTTTTATTTGGTTCTGTCTTTGACCCAACAAGATATGAAAGGGCGATAAATGTGACTGAACTGCAGCATGACCTTGAATTATTGCCTGGTGGTGATCATACTGAAATTGGTGAAAGAGGGGTAAACATCAGTGGTGGCCAAAAGCAGAGAGTATCCATGGCTAGAGCTGTCTACTCAAATTCTGATGTGTACATCTTTGATGACCCCCTAAGTGCTCTGGATGCACATGTGGCTAGACAGGTTTTTGATAAATGCATCAAGGGAGATTTGAGAGAGAAGACCCGGGTTCTTGTCACAAATCAGCTGCATTTTCTTTCACAGGTTGATAGAATCATTTTGGTCCATGAAGGTATGGTGAAGGAGGAGGGAACTTTTGAGGAACTCTCTAACCACGGACCGCTGTTTCAAAAGCTTATGGAAAATGCGGGTAAGATGGAGGAGTATGAAGAAGAAGAAAAGGTAGTTACTGAAACCACCGATCAGAAGCCATCTTCAGAACCAGTGGCCAATGGATCAGTTAATGATCATGCAAAGAGTGGAAGTAAACCAAAAGAAGGAAAATCTGTTCTTATTAAACAAGAAGAACGAGAAACAGGGGTTGTCAGCTGGAATGTTCTACTGAGGTACAAGAATGCATTAGGAGGGTTTTGGGTGGTTTTTGTACTCTTTGCATGCTATGTCTCAACGGAAACATTACGAATATCAAGTAGCACATGGTTAAGCCATTGGACTGATCAGAGTGCTACAAAGGGTTATAACCCTGCCTTCTACAATATGATATATGCAGCTCTATCATTTGGTCAGGTCTTGGTGACTTTAACAAATTCTTATTGGTTAATCATATCAAGTCTTTATGCTGCCAGAAGGTTGCACGAAGCCATGCTTAGCTCCATATTACGAGCTCCCATGGTGTTTTTCCAAACAAATCCACTTGGAAGAGTTATCAACAGGTTTGCGAAGGATCTAGGTGACATTGATCGTAATGTTGCTCCATTTGTGAATATGTTTCTAGGTCAAGTGTCCCAGCTTCTTTCAACCTTCATCCTCATAGGCATTGTCAGCACAATGTCCTTGTGGGCAATACTGCCATTGTTGGTGTTGTTTTATGTAGCATATTTATACTATCAGAGCACCGCTCGTGAAGTAAAGCGCTTAGACTCAATTAGCAGATCTCCCGTTTACGCACAGTTTGGAGAAGCACTGAATGGCTTATCAACGATTCGTGCTTACAAAGCGTATGATCGAATGGCAGATATAAATGGGAAATCCATGGACAACAACATCCGATTCACTCTGGTGAACATAAGCGGAAACCGATGGCTTGCAATCCGATTGGAAACTTTGGGAGGCCTCATGATATGGTTGACTGCAACCTTTGCCGTCATGCAGAATGGCAGGGCGGAGAACCAGCAAGAATTCGCATCCACCATGGGGTTACTACTTAGCTATGCTCTGAACATTACTAGTTTGCTTACCGGTGTGCTGAGGCTGGCAAGTTTGGCTGAGAATAGTTTAAACGCAGTTGAACGGATTGGCACTTACATTGATTTGCCCTCGGAGGCTCCCTCTATCATCGATGATAATCGCCCTCCTCCTGGCTGGCCTTCCTCAGGCTCAATCAGATTCGAAGATGTTGTTCTTCGCTACAGAGCTGAACTTCCTCCTGTGTTGCATGGCTTGTCTTTCACCATTTTCCCAAGTGATAAGGTTGGCATTGTTGGGAGGACAGGTGCAGGAAAATCCAGCATGCTTAATGCTTTGTTTCGAATTGTAGAATTGGAACGTGGAAGAATATTAATTGATGATTATGATGTTGCAAAGTTTGGGCTTGCTGATTTGCGTAAAGTTCTTGGCATTATACCACAATCTCCTGTTCTCTTTTCAGGAACTGTGAGATTTAATCTTGATCCATTTAATGAACACAATGATGCTGACCTCTGGGAGGCTCTGGAGAGGGCACATTTGAAGGATGTGATACGGAGGAATTCTCTGGGGCTGGACGCTGAGGTATCTGAGGCAGGCGAGAACTTCAGTGTTGGACAAAGACAACTGTTGAGTCTTTCTCGGGCTTTATTGCGTAGATCAAAGATATTAGTACTTGACGAAGCAACCGCAGCAGTTGATGTTAGAACAGATGCACTCATACAGAAAACAATTCGAGAGGAATTCAAATCTTGTACAATGCTCATTATAGCTCATCGCCTTAACACCATTATTGATTGTGATCGGATTCTTTTGCTTGATGGTGGTAAGGTTCTTGAATATGATACCCCTGAGGAGCTGTTGTCAAATGAAGGTAGTGCTTTCTCTAAGATGGTCCAAAGTACAGGAGCGGCAAATGCCCAATATTTACGCAGCTTAGCCCTTGGAGGGGATAAGTCAGAAAGAGAAGAGAACGAGCATCTAGATGGCAAGAGAAAATGGCTTGCTTCTTCTCGGTGGGCTGCTGCAGCGCAATTTGCTCTCGCTGTTAGTCTCACCTCATCCCATAATGACCTACAACGTTTGGAAGTGGAAGATGAGAACAGTATTCTGAAGAAGACAAAGGATGCTCTGATAACTTTGCAGGGGGTTTTGGAAAGGAAGTATGATAAAGAAATCGAGGAATCTTTGAACCAGCGCCAAGTATCCCCAGAGGGATGGTGGTCATCGCTTTATAAAATGATTGAAGGTCTTGCTATGATGAGCAGATTGGCCAAGAACAGGCTCCATCAATCAGACTTCGGTTTTGAGGACAGATCAATTAACTTTGATCAAGTTGATATGTAG 4863 0.4199 MTFEPLDWYCRPVANGVWTRSVENAFGAYTPCAVDSLVISVSNLILLGLCIYRIWLIKKDFTVKRFHLRSNLYNYILGLLALYCVAEPLYRLILGISVLNLDGQTQFAPFEIVSLIIEALAWCSILILIGIETKVYIREFRWFVRFGLIYAIVGDAVMFNLIISVKELYSSSVLYLYISEVVGQVLFGILLLVYVPTLDPYPGYTPIGSDMITDAAYDELPGGDMICPERNANILSKIMFSWMNPIMKLGYQRPLTEKDIWKLDTWERTETLINKFQKCWVEESRKPKPWLLRALNASLGGRFWWGGFCKIGNDISQFLGPLILNQLLQSMQNGDPSWTGYAYAFSIFVGVVFGVLCEAQYFQNVMRVGYRLRSTLVAAVFRKSLRLTHEARKQFATGKITNLMTTDAEALQQICQSLHTLWSAPFRIVVAMVLLYQQLGVASLLGALMLVLMFPLQTFIISRMQKFSKEGLQRTDKRIGLMNEILAAMDTVKYYAWESSFQSKVQIVRNDELSWFRKASLLGACNAFILNSIPVFVTVITFGVFTLLGGDLTPARAFTSLSLFSVLRFPLFMLPNTITQVVNANVSLKRLEDLLLAEERILLSNPPLEPGLPAISIKNGYFSWDTKAERATLSNINLDIPVGCLVAVVGSTGEGKTSLVSAMLGELPPMADSTVVLRGTVAYVPQVSWIFNATVRDNVLFGSVFDPTRYERAINVTELQHDLELLPGGDHTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVARQVFDKCIKGDLREKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEELSNHGPLFQKLMENAGKMEEYEEEEKVVTETTDQKPSSEPVANGSVNDHAKSGSKPKEGKSVLIKQEERETGVVSWNVLLRYKNALGGFWVVFVLFACYVSTETLRISSSTWLSHWTDQSATKGYNPAFYNMIYAALSFGQVLVTLTNSYWLIISSLYAARRLHEAMLSSILRAPMVFFQTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFILIGIVSTMSLWAILPLLVLFYVAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDNNIRFTLVNISGNRWLAIRLETLGGLMIWLTATFAVMQNGRAENQQEFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERIGTYIDLPSEAPSIIDDNRPPPGWPSSGSIRFEDVVLRYRAELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDYDVAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDGGKVLEYDTPEELLSNEGSAFSKMVQSTGAANAQYLRSLALGGDKSEREENEHLDGKRKWLASSRWAAAAQFALAVSLTSSHNDLQRLEVEDENSILKKTKDALITLQGVLERKYDKEIEESLNQRQVSPEGWWSSLYKMIEGLAMMSRLAKNRLHQSDFGFEDRSINFDQVDM* 1621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2486 1620 MobiDBLite consensus disorder prediction 844 887 - -
Gso11g2486 1620 Gene3D - 609 864 IPR027417 -
Gso11g2486 1620 SUPERFAMILY ABC transporter transmembrane region 914 1218 IPR036640 GO:0005524|GO:0016021
Gso11g2486 1620 MobiDBLite consensus disorder prediction 858 875 - -
Gso11g2486 1620 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso11g2486 1620 SMART AAA_5 642 820 IPR003593 -
Gso11g2486 1620 SMART AAA_5 1264 1457 IPR003593 -
Gso11g2486 1620 Pfam ABC transporter transmembrane region 306 571 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso11g2486 1620 Pfam ABC transporter transmembrane region 918 1161 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso11g2486 1620 CDD ABCC_MRP_domain1 615 815 - -
Gso11g2486 1620 Pfam ABC transporter 633 768 IPR003439 GO:0005524
Gso11g2486 1620 Pfam ABC transporter 1255 1403 IPR003439 GO:0005524
Gso11g2486 1620 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 35 1515 - -
Gso11g2486 1620 Gene3D - 1221 1474 IPR027417 -
Gso11g2486 1620 ProSitePatterns ABC transporters family signature. 1375 1389 IPR017871 GO:0005524
Gso11g2486 1620 PANTHER ABC TRANSPORTER C FAMILY MEMBER 1 35 1515 - -
Gso11g2486 1620 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 839 IPR003439 GO:0005524
Gso11g2486 1620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 838 IPR027417 -
Gso11g2486 1620 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1238 1472 IPR003439 GO:0005524
Gso11g2486 1620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1228 1469 IPR027417 -
Gso11g2486 1620 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524
Gso11g2486 1620 CDD ABC_6TM_ABCC_D2 917 1213 IPR044726 GO:0140359
Gso11g2486 1620 Gene3D ABC transporter type 1, transmembrane domain 277 601 IPR036640 GO:0005524|GO:0016021
Gso11g2486 1620 Gene3D ABC transporter type 1, transmembrane domain 881 1219 IPR036640 GO:0005524|GO:0016021
Gso11g2486 1620 CDD ABC_6TM_ABCC_D1 305 591 IPR044746 GO:0140359
Gso11g2486 1620 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 918 1201 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso11g2486 1620 SUPERFAMILY ABC transporter transmembrane region 287 595 IPR036640 GO:0005524|GO:0016021
Gso11g2486 1620 CDD ABCC_MRP_domain2 1236 1456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2486 Gso-Chr11 40919929 40942770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2486 1254 1478 Calmodulin-binding Proteins AT2G36910 31.441 1.38e-28 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2486 - - gmx:100795004 3112.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0782 15 7096873 7118827 Gso11g2486 11 40919929 40942770 GST