Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2485 ATGGAGGAGGATGAGATTCAAGCATGTAAGTTCCCAAGAGTTGGAAATGGTAGGAGTAGTGACCAATACCAAGAGGAGGAAGAAGAGGGTGGTGACCTAAGACTTAGAAAAGGTGTTGGTGTTGGTGGTGGTGGTGGAGGTGGAGGAAGTGATGCTAGCACAAACCACTTCCACCAAAGTAGTTGGCACCATTCTTCTAGAATCATAAGGGTGTCTCGAGCATCTGGTGGCAAAGACAGGCACAGCAAAGTGATGACCTCAAAAGGGTTAAGAGACAGAAGGGTTAGGCTCTCTGTGACCACAGCTATTCAGTTCTATGACCTTCAAGATCGCTTGGGTTACGACCAACCTAGCAAAGCTGTTGAGTGGTTAATCAAAGCTGCTTCAGAAGCTATCTCTGAGCTTCCTTCTCTCAACAACCCTTTCCCTGATACCCCTAAGCAACTAAGTGATAAGAAAAGGCCTACTAGTGGTGGTGGTCAACAACAACAACAAATACAACAAGGCCACTTTGATGATGCTGATGGAGACACAAGTTACCCCCAAAACCAAAGCCAGAACCTTTCTCTCTCCAAGTCTGCTTGCAGCAGCACTTCCGAGACAAGCAAGGGCTCAGGCTTGTCCCTCTCAAGGTCTGAGATTCGTGTGAACCGTGTTAAGGCAAGGGAGAGGGCTAGGGAGAGAGCTGCTAAAGAAAAAGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAAGAGAGTGAATCTAGCATTGCACATCACCACCATCATCACCATGTGAACAACAACAACCACATGTCTCACACAGCTTCCTTCACTGAGCTTCTCACTGGTGGGATTGGGAGCACTGTAACAGTTAACCCCAACACCACCACCACCACCACCACAACAACAACAAGTCCTAATGGGTCATCAGTTCATCAGATCCATGATGGTCATGATCATGAGACTAATCTATTCAACAAGGGAAGGCAACAACAACAACAGCATCATTGGTCTCAAACAGTGACACCTATGGACTACTTCAGCACAGGCCTCTTGGTAGGACCTTCTTCATCATCTGCAAGAACTCAACAACACCAACACCAATCTTCTTCAGCACATTTCCAACTGGGACATGCACATGCCCTTCCAATCTCTCCATTCAGTGGAGAAAACCACTCAGAGCAGCTGCAGCATTTTTCCTTCATGCCAGACCACCTCAACAACATACCAGCTCATCATGTGGTTACATCTTCTTCTGCTTCTCATCAACCCAACGGGGGTGACAACAACTACAACCTCAACTTCAGTATCTCTACATCGACGGGCCTTGCTGGTTACAACAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTTCCTCGTTTTTGCCTCATCACCTCCAGAGGTTTCAACCTTTAGACGGATCGTCCAACCTACCTTTCTTTATAGGAGCTGCTGCTCCTTCTTCTGCTCCTCCAACCATGGACAACAACAACAATAATAACAGCAACAACCATCACCACCTTCAGTTCTCACCTGTCTTTGATGGCCGCTTGCAACTCTGCTATGGCGATGGAACAAGGCATTCTGACCACAAGGGGAAGGGAAAGAACTAA 1599 0.4728 MEEDEIQACKFPRVGNGRSSDQYQEEEEEGGDLRLRKGVGVGGGGGGGGSDASTNHFHQSSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASEAISELPSLNNPFPDTPKQLSDKKRPTSGGGQQQQQIQQGHFDDADGDTSYPQNQSQNLSLSKSACSSTSETSKGSGLSLSRSEIRVNRVKARERARERAAKEKEKEKEKEKEKEKESESSIAHHHHHHHVNNNNHMSHTASFTELLTGGIGSTVTVNPNTTTTTTTTTTSPNGSSVHQIHDGHDHETNLFNKGRQQQQQHHWSQTVTPMDYFSTGLLVGPSSSSARTQQHQHQSSSAHFQLGHAHALPISPFSGENHSEQLQHFSFMPDHLNNIPAHHVVTSSSASHQPNGGDNNYNLNFSISTSTGLAGYNNRGTLQSNSPSSSFLPHHLQRFQPLDGSSNLPFFIGAAAPSSAPPTMDNNNNNNSNNHHHLQFSPVFDGRLQLCYGDGTRHSDHKGKGKN* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2485 532 MobiDBLite consensus disorder prediction 135 212 - -
Gso11g2485 532 Pfam TCP family transcription factor 76 235 IPR017887 -
Gso11g2485 532 ProSiteProfiles TCP domain profile. 77 135 IPR017887 -
Gso11g2485 532 MobiDBLite consensus disorder prediction 484 504 - -
Gso11g2485 532 ProSiteProfiles R domain profile. 215 233 IPR017888 -
Gso11g2485 532 MobiDBLite consensus disorder prediction 1 50 - -
Gso11g2485 532 MobiDBLite consensus disorder prediction 283 307 - -
Gso11g2485 532 MobiDBLite consensus disorder prediction 20 35 - -
Gso11g2485 532 MobiDBLite consensus disorder prediction 485 504 - -
Gso11g2485 532 MobiDBLite consensus disorder prediction 215 253 - -
Gso11g2485 532 PANTHER TRANSCRIPTION FACTOR TCP24 1 532 - -
Gso11g2485 532 MobiDBLite consensus disorder prediction 135 265 - -
Gso11g2485 532 Coils Coil 219 250 - -
Gso11g2485 532 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 532 IPR005333 GO:0003700
Gso11g2485 532 MobiDBLite consensus disorder prediction 349 368 - -
Gso11g2485 532 MobiDBLite consensus disorder prediction 283 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2485 Gso-Chr11 40896528 40906840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2485 60 532 TCP Transcription Factor Family AT4G18390 41.379 1.07e-69 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso11g2485 TCP 1.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2485 - - gmx:100787772 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0783 15 7134682 7145574 Gso11g2485 11 40896528 40906840 GST