Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2461 ATGGTTACGTTCAGGTTTCACCAGTACCAGGTGGTCGGGAGGGCTCTCCCAACGGAAGCAGATCAGCATCCGAAGATCTACCGAATGAAGCTCTGGGCCACCAACGAGGTTCGCGCCAAGTCTAAGTTCTGGTATTTTTTGAGGAAGCTGAAGAAGGTAAAGAAGAGCAATGGTCAAGTTCTTGCTATCAACGAGATTTTTGAGAAGAACCCAACCAAGATTAAGAACTACGGGATATGGTTGCGGTATCAGAGTAGGACTGGTTACCACAACATGTACAAGGAGTACCGTGACACCACTCTAAACGGTTCAGTTGAGGCAATGTACAATGAGATGGCTTCTCGCCACAGGGTCAGGAGCCCATGCATCCAAATTATCAAGACTGCAACCATCCCAGCTAAGCTTTGCAAGAGGGAGAGCACCAAGCAATTCCACAACTCCAAAATCAAGTTCCCATTGGTCTTCCAGAAAGTTAGACCACCTACCAGGAAGCTGAAGACCACATACAAGGCCAAAAAGCCCAATTTGTTTATGTAA 537 0.4693 MVTFRFHQYQVVGRALPTEADQHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGSVEAMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFQKVRPPTRKLKTTYKAKKPNLFM* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2461 178 SUPERFAMILY RplX-like 71 146 - -
Gso11g2461 178 Gene3D - 1 71 - -
Gso11g2461 178 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 128 IPR023573 GO:0003735|GO:0005840|GO:0006412
Gso11g2461 178 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
Gso11g2461 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 138 178 IPR028877 -
Gso11g2461 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 137 IPR028877 -
Gso11g2461 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 138 178 - -
Gso11g2461 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 137 - -
Gso11g2461 178 PIRSF Ribosomal_L18a 1 178 IPR021138 GO:0003735|GO:0005840|GO:0006412
Gso11g2461 178 Gene3D - 72 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2461 Gso-Chr11 40617563 40619836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2461 1 178 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 90.449 1.42e-121 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2461 K02882 K22683 gmx:100500108 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0808 15 7426433 7428458 Gso11g2461 11 40617563 40619836 GST