Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2460 ATGGAGCAGTACGGCCGGTCCAGTGAAGGTTCGCGGTCTGATCCGTCGCCGGAATGGGCCGAGCCCGAAGCCCAAACCGGGCTCGAAGAGCCTGTGTGGCAATTGGGAATGGGTGGTGGTGCTGGGGAGGAATCGTATCCGCAACGCCCCGATGAGGTTGATTGCACTTACTATTTGAGGACCGGCTTCTGTGGCTTCGGTTCCCGCTGTCGGTTCAACCATCCTCGTGATCGTGCCGTGGTTGCCGGAGCTGAGAGGACTGCAGGGGAGCATCCGGAACGAGTAGGCCAGCCTGTGTGCCAGTATTTCATGAGGACAAGGACATGCAAATTTGGTTCATCTTGCAAGTACCACCACCCCAGGCAGGCAGGAGCAGGGGGCGCTGCTGCTACCCCTGTGTCACTAAATTATTATGGATATCCATTGCGACAGGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCATCCAAATTCCACCATCGCCATTTGCCCCAGTTTCACCTTTGCCTGTACCAGTACCTTCGCCGTTATATTCAACCATGCAGCCCCCACCTGGTCCTTCGTCCCAGCAAATTGGTGTGCTGGTTGCGAGGCCTCCTATGCTGCCTGGCTCATTAGTCCAGAGCCCCTATGGACCTGTGGTACTGTCCCCTGCCATGGTACCTATTTCTGGCTGGGGTCCTTATCAAGCTTCTGCATCAGGTGCTGTTCTTCCTTCTGGTACTCCATCTAATGTTGGTTCAGCACAGCTTTATGGGATAACCCAGCTACCTTCACCAGCAGCTGCCTATCCTGGACCTTATCCACCTTCTGGTTCCCCAGTTGGTCCTCCAAGCAGTAGTCAGAAGGAGCAGGCATTTCCAGAAAGGTCTAACCAACCAGAATATCAGTATTATCTGAAAACAGGGGAGGTTAAATTTGGTCCATCATATAGGTATAACCCTCCACCGGACATGAGTGTGCCGGACATGAGTGCGCCAAAAGCAAATGTGATTCTTAGTCCTGCAGGTCTTCCTTTGCGCCCGGGGGCACCAGCTTGCACTCATTATGCACAACATGGAGTATGTAAGTTTGGTTCTGCATGTAAATTCGATCATCCTATGGGATCAATGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGACATGCCAGTTGCACCCTATCCTGTGGGTTCAACAATTGCTACTCTTGCTCCATCATCTTCATCTTCAGATTTGCGGCCTGAACCTAGCTCAGGATCCAGTAAAGAGTCTGTTCCATCCAGAATGCCTTCATCAACATTGACTGGGTCAATCGGCTCGACTTTGTCGACTGGTGGACCCATTTCTCAATCGAGCACTCAACCACCTTCCCAAAGTTCAGGTCCTTTAGCCGCTGTCACTAGCACCACAAGTAGCAATGTCTCTCACACCTCAAGCTAA 1476 0.5163 MEQYGRSSEGSRSDPSPEWAEPEAQTGLEEPVWQLGMGGGAGEESYPQRPDEVDCTYYLRTGFCGFGSRCRFNHPRDRAVVAGAERTAGEHPERVGQPVCQYFMRTRTCKFGSSCKYHHPRQAGAGGAAATPVSLNYYGYPLRQGEKECSYYVKTGQCKFGATCKFHHPVPAGIQIPPSPFAPVSPLPVPVPSPLYSTMQPPPGPSSQQIGVLVARPPMLPGSLVQSPYGPVVLSPAMVPISGWGPYQASASGAVLPSGTPSNVGSAQLYGITQLPSPAAAYPGPYPPSGSPVGPPSSSQKEQAFPERSNQPEYQYYLKTGEVKFGPSYRYNPPPDMSVPDMSAPKANVILSPAGLPLRPGAPACTHYAQHGVCKFGSACKFDHPMGSMSYSPSASSLADMPVAPYPVGSTIATLAPSSSSSDLRPEPSSGSSKESVPSRMPSSTLTGSIGSTLSTGGPISQSSTQPPSQSSGPLAAVTSTTSSNVSHTSS* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2460 491 SUPERFAMILY CCCH zinc finger 145 170 IPR036855 GO:0046872
Gso11g2460 491 Gene3D - 47 125 - -
Gso11g2460 491 Gene3D - 128 176 - -
Gso11g2460 491 MobiDBLite consensus disorder prediction 295 310 - -
Gso11g2460 491 SUPERFAMILY CCCH zinc finger 51 77 IPR036855 GO:0046872
Gso11g2460 491 SUPERFAMILY CCCH zinc finger 95 121 IPR036855 GO:0046872
Gso11g2460 491 MobiDBLite consensus disorder prediction 1 48 - -
Gso11g2460 491 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Gso11g2460 491 SMART c3hfinal6 94 121 IPR000571 GO:0046872
Gso11g2460 491 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Gso11g2460 491 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Gso11g2460 491 SMART c3hfinal6 359 386 IPR000571 GO:0046872
Gso11g2460 491 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Gso11g2460 491 ProSiteProfiles Zinc finger C3H1-type profile. 359 387 IPR000571 GO:0046872
Gso11g2460 491 PANTHER PROTEIN PHOSPHATASE RELATED 1 482 - -
Gso11g2460 491 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 362 386 IPR000571 GO:0046872
Gso11g2460 491 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 76 IPR000571 GO:0046872
Gso11g2460 491 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 145 169 IPR000571 GO:0046872
Gso11g2460 491 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 97 121 IPR000571 GO:0046872
Gso11g2460 491 SUPERFAMILY CCCH zinc finger 363 388 IPR036855 GO:0046872
Gso11g2460 491 MobiDBLite consensus disorder prediction 416 491 - -
Gso11g2460 491 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Gso11g2460 491 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 482 - -
Gso11g2460 491 MobiDBLite consensus disorder prediction 281 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2460 Gso-Chr11 40600689 40607925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2460 1 455 C2H2 Transcription Factor Family AT5G18550 55.269 1.04e-143 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso11g2460 zf-CCCH 9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2460 - - gmx:100782445 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0809 15 7439480 7446782 Gso11g2460 11 40600689 40607925 GST
Gso7g2114 7 45005321 45010485 Gso11g2460 11 40600689 40607925 PCT
Gso17g0191 17 1772952 1778252 Gso11g2460 11 40600689 40607925 PCT
Gso11g2460 11 40600689 40607925 Gso7g2114 7 45005321 45010485 PCT
Gso11g2460 11 40600689 40607925 Gso17g0191 17 1772952 1778252 PCT